Sequence
atgc intronic sequence ATGC exonic sequencegtaataagtggaaatattactttcctgcttaaaatgggttgtctacaatctaaatttttcttgtgttttacaacatccagGTACTACTGGTGCCTGCAGCATTCACAACAGTAACTGGTGAAGCACATTGGGAGATTCTTCTTCGTGCCCGTGTAATTGAGACTCAATGCTAT
Basic information
species | Glycine max |
transcript | GLYMA20G38690.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G38690.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G08790.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------------gtaataa-gtggaaatattactttcctgcttaaaatgggtt--gtctacaatctaaatttttcttgtgttttacaacatccagGTACTACTGGTGCCTGCAGCATTCACAACAGTAACTGGTGAAGCACATTGGGAGATTCTTCTTCGTGCCCGTGTAATTGAGACTCAATGCTAT
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ctctgcgaaaaaacgacgaaacaaaaatgtgataaaactgagttcctacagaaaaaaagcacagacttgagtataaaatgtctgt---cttaatgctctgcagGTTTTACTAGTACCATCAGCTTTCACCAAGGTCACTGGGGAGGCACACTGGGAGATTCTTCTTCGAGCCCGAGCAATTGAAACTCAATGTTAT
upper sequence: GLYMA20G38690.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0067g03530.t01 (Vitis vinifera), 3'ss of exon 5
gta-ataagtggaaatattactttcctgc-ttaaaatgggttgtctacaatctaaatttttcttgtgtt--ttacaacatccagGTACTACTGGTGCCTGCAGCATTCACAACAGTAACTGGTGAAGCACATTGGGAGATTCTTCTTCGTGCCCGTGTAATTGAGACTCAATGCTAT
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gtacatacaaggggattccttagctttgcattgtgaccggctttcttt--tcttacctatgttaacattgattaaaatatgcagGTTCTATTGGTGCCTGCAGCTTTCACAAAAGTAACTGGTCAAGCACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7693255|gb|AW761350.1|AW761350EST: AATTGCTACGTTTCCAACATGAAGCACAG GTACTACTGGTGCCTGCAGCATTCACAACAGTAACTGGTGAAGCACATTGG
genomic: AATTGCTACGTTTCCAACATGAAGCACAGgtaataagtg ... caacatccagGTACTACTGGTGCCTGCAGCATTCACAACAGTAACTGGTGAAGCACATTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcttaaaatgggttgtctacaatctaaatttttcttgtgttttacaacatccagGTACTACTGGTGCCTGCAGCATTCACAACAGTAACTGGTGAAGCACATTGGGAGATTCTTCTTCGTGCCCGTGTAATTGAGACTCAATGCTAT
atctaaa putative branch site (score: 3)
tacaatctaaattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataagtggaaatattactttcctgcttaaaatgggttgtctacaatctaaatttttcttgtgttttacaacatccagGTACTACTGGTGCCTGCAGCATTCACAACAGTAACTGGTGAAGCACATTGGGAGATTCTTCTTCGTGCCCGTGTAATTGAGACTCAATGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT