1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acaatgtattgcttgctgtagtttttatattgctatttttcttttgttttaaaaccagggtttactgaattccatgattggttttatttgtctttttcagATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGAGAGAAAATGCCAATTGCTAAG
species | Glycine max |
transcript | GLYMA20G38690.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAG ATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGEST: gi|9900235|gb|BE609203.1|BE609203
genomic: CAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAGgtaagaaact ... tctttttcagATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTG
EST: CAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAA ATCGTTAGTCTACAGGCATTGTAGTAACTGATATTGATTTATCATTTGTTG
genomic: CAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAGgtaagaaact ... tctttttcagATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTG
gttttaaaaccagggtttactgaattccatgattggttttatttgtctttttcagATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGAGAGAAAATGCCAATTGCTAAG
ttttatttgtcttttt CT-rich tract
ttttatttgtcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatgtattgcttgctgtagtttttatattgctatttttcttttgttttaaaaccagggtttactgaattccatgattggttttatttgtctttttcagATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGAGAGAAAATGCCAATTGCTAAG
-caatgta
- - - - - gcttgct
- - - - - - - - - - - - - - - tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - aaaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat