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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataataatatgcatgctcccttttcaattagGAAGCAGCATCTGCTGGAGCCAAATTGCTTTGCTTTCCTGAGGCCTTCTCTTACGTGGGCACTATGGATGGGGACAGCGTTCTTGTTGCTGAACCATTGG

Basic information

species Glycine max
transcript GLYMA20G38690.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38690.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os12g31830.1 (Oryza sativa), 3'ss of exon 1
------------------------------------------------------------------gtatataataatatgcatgctcccttttcaattagGAAGCAGCATCTGCTGGAGCCAAATTGCTTTGCTTTCCTGAGGCCTTCTCTTACGTGGGCACTATGGATGGGGACAGCGTTCTTGTTGCTGAACCATTGG
                                                                  |   |    | ||  |||     | |||   | |||||||||||||  |||| | |||||| ||||||||||||||||  ||||| | | | ||| | | |||||| ||     ||    ||||||||||||| |
gtaggtagttctgaaatctgaattgtacttccattttttttttgttcttctgttttgttgggtaatgccaaggggacta-acatagagtcattttcttcagGAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATAGGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatataataatatgcatgctcccttttcaattagGAAGCAGCATCTGCTGGAGCCAAATTGCTTTGCTTTCCTGAGGCCTTCTCTTACGTGGGCACTATGGATGGGGACAGCGTTCTTGTTGCTGAACCATTGG
                                                      catgctcccttttc  CT-rich tract
                     tatataataatatgca  TA-rich tract