1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tggaaaaatatgtggttaacaattctcttgtttttattggagcagtacagcttttgtaagtagtatttccttactcatacatttgtttctttggtttcagCAAAGAAAGCCAATTGACTTCTGGAAAGCTGCATCTCTATAG
species | Glycine max |
transcript | GLYMA20G38690.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGATTTATCATTTGTTGATTCAGTTAGAGAGAAAATGCCAATTGCTAAG CAAAGAAAGCCAATTGACTTCTGGAAAGCTGCATCTCTATAGEST: gi|9900235|gb|BE609203.1|BE609203
genomic: TTGATTTATCATTTGTTGATTCAGTTAGAGAGAAAATGCCAATTGCTAAGgtaagtttgt ... ttggtttcagCAAAGAAAGCCAATTGACTTCTGGAAAGCTGCATCTCTATAG
EST: TTGATTTATCATTTGTTGATTCAGTTAGAGAGAAAATGCCAATTGCTAAG CAAAGAAAGCCA
genomic: TTGATTTATCATTTGTTGATTCAGTTAGAGAGAAAATGCCAATTGCTAAGgtaagtttgt ... ttggtttcagCAAAGAAAGCCA
tacagcttttgtaagtagtatttccttactcatacatttgtttctttggtttcagCAAAGAAAGCCAATTGACTTCTGGAAAGCTGCATCTCTATAG
tccttac putative branch site (score: 2)
tttgtttcttt putative PPT
ttttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaaaatatgtggttaacaattctcttgtttttattggagcagtacagcttttgtaagtagtatttccttactcatacatttgtttctttggtttcagCAAAGAAAGCCAATTGACTTCTGGAAAGCTGCATCTCTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- -aaaaata
- - - - - tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - -gcttttg