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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAGACAGATGCATTGGAAGAGTGTTCAGAATGGTTGAAAGCACATGGGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttgatctctatcctctgtattcatgtcctgtaggtgctaatctaataaaaaaaatttgttctcaagcatctagcatttgatttgttgaatcatc...

Basic information

species Glycine max
transcript GLYMA20G38620.2
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566150|gb|AW233787.1|AW233787
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|208067947|gb|GD861457.1|GD861457
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|208158789|gb|GD954678.1|GD954678
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAG
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAG
EST: gi|193481042|gb|FK443879.1|FK443879
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|58019863|gb|CX706605.1|CX706605
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|193551572|gb|FK505683.1|FK505683
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTG
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTG
EST: gi|193414309|gb|FK380949.1|FK380949
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTG
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTG
EST: gi|193394053|gb|FK358128.1|FK358128
EST:     GGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|193399204|gb|FK361738.1|FK361738
EST:     GGCCAGCATAATTACTGATAACAACGGAGATATAGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTT-GTGCCAGAACCAGAGGATGCTGTTGCCCAC
genomic: GGCCAGCATAATTACTGATAACAACGGAGATAT-GCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|207757986|gb|GD729194.1|GD729194
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|19269696|gb|BM885952.1|BM885952
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|208297891|gb|GE090992.1|GE090992
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|208184883|gb|GD981131.1|GD981131
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|213597210|gb|DB977741.1|DB977741
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|208256337|gb|GE051734.1|GE051734
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: gi|193720237|gb|FK655381.1|FK655381
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCT
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCT
EST: gi|193328250|gb|FK294271.1|FK294271
EST:     GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA                         GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
genomic: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAGAGACAGATGCATTGGAAGAGTGTTCAGAATGGTTGAAAGCACATGGGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAAgtatgtttgatctctatcctctgtattcatgtcctgtaggtgctaatctaataaaaaaaatttgttctcaagcatctagcatttgatttgttgaatcatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa