1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gaagggcttttggggtggtagtttgtatactctatatccctaattccatatatattttccaacttttctccacatgataactcttgaaacaatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG
species | Glycine max |
transcript | GLYMA20G38620.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGEST: gi|193682710|gb|FK621764.1|FK621764
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGEST: gi|193690224|gb|FK627997.1|FK627997
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGEST: gi|207822545|gb|GD795208.1|GD795208
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGEST: gi|193532296|gb|FK491976.1|FK491976
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: CGCCAAGACCTAACTGTTCTAACGTAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGEST: gi|193694976|gb|FK634348.1|FK634348
genomic: CGCCAAGACCTAACTGTTC-AACG-AATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGEST: gi|193670598|gb|FK612720.1|FK612720
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCAACTAGGAATTTGGGGACCTGTTTEST: gi|208319804|gb|GE110829.1|GE110829
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCA-CT-GGAATTTGGGGACCTGTTT
EST: CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAAACAAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAEST: gi|193454256|gb|FK420823.1|FK420823
genomic: CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATT-AAC-AGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGA
EST: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGEST: gi|208284795|gb|GE085609.1|GE085609
genomic: TTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
EST: CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAG GTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
genomic: CGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcattt ... aatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAG
ccatatatattttccaacttttctccacatgataactcttgaaacaatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG
tgataac putative branch site (score: 2)
tatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagggcttttggggtggtagtttgtatactctatatccctaattccatatatattttccaacttttctccacatgataactcttgaaacaatgcttcagGTGTATGAAACACATGCCCGATTGGCACTGGAATTTGGGGACCTGTTTGAGTATAATCAG
- - -gcttttg
- - - - - - gggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgata