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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGGATATTGACTGGGATGCTCTAACTGTGAAGGGTACTTGCCAGGAAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctcctctcgggaatttaaattgtttgctgctacttttttctgccttcctcttccctccactccttgaccatgaaccttattaaaattttatgaatttacag

Basic information

species Glycine max
transcript GLYMA20G38620.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g61930.1 (Oryza sativa), 5'ss of exon 7
TGTTGAGGATATTGACTGGGATGCTCTAACTGTGAAGGGTACTTGCCAGGAAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgt--------------aatgtctcctc--------------tcgggaatttaaattgtttgctgctacttttttctgccttcctcttccctccactccttgaccatgaaccttattaaaatt--ttatgaatttacag
||| |||||| | || |||||||| || ||||| ||||| || || ||||||||||| ||  | |||||||| || || || ||||||||||||||||| ||              ||| |  |||               | || ||   | ||||||    |  | || | |||   |     || | |||  |   |   | |     |  ||    ||  | ||   ||| |||
TGTGGAGGATTTGGATTGGGATGCACTGACTGTCAAGGGAACATGTCAGGAAATTGAGAAAAGATACCTTCGTCTTACATCAGCACCTGATCCTGCCACAgtgagaatgctctgctaatattaccttgtaaactgcctagattggaaaaacatattgttgataggaaattgtctctagatgttgttttcttccttttgctactccttgctttagttttgtttcatcataccttttcag

upper sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTGAGGATATTGACTGGGATGCTCTAACTGTGAAGGGTACTTGCCAGGAAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctcctctcgggaatttaaattgtttgctgctacttttttctgccttcctcttccctccactccttgaccatgaaccttattaaaattttatgaatttacag
||| || || |||||||||||||| |||||||| || || ||||||||||||||||| || || || || || || |||||||| || ||||||||||| ||||                   | |||  |  ||  ||  || || | |||     |    |  || || ||||    |   ||  |  | ||      |||| |||
TGTGGAAGACATTGACTGGGATGCACTAACTGTTAAAGGCACTTGCCAGGAAATTGAGAAACGTTATCTCCGTCTGACTTCTGCGCCAGATCCTGCCACCgtaa-------------------atattactatct--tatattcttatacctagtattctttttgacaccatgactgatatttttgattgactt------attttcag

upper sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0067g03720.t01 (Vitis vinifera), 5'ss of exon 2
TGTTGAGGATATTGACTGGGATGCTCTAACTGTGAAGGGTACTTGCCAGGAAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctcctctcgggaatttaaattgtttgctgctacttttttctgccttcctcttccctccactccttgaccatgaaccttattaaaattttatgaatttacag
|||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| || || || ||||| |||||||| ||||||||  | ||||| ||     || ||    |||     | |||   ||      |||      |     | |||    || ||||| |   || ||| |   |                
TGTTGAAGATATTGACTGGGATGCCCTTACTGTTAAGGGAACTTGCCAGGAAATCGAAAAACGTTATCTGCGCCTTACTTCTGCCCCTGATCCCTCTACTgtgattatctctttctc--attccctctctttaaagcattccgttttcatgcttaatattcctaatttctttgac-acttacattacttgcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207756058|gb|GD729981.1|GD729981
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACT                         GTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC
EST: gi|208340520|gb|GE137874.1|GE137874
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACT                         GTAAGACCTGAAGAGGTTCTTAGAAAAAGCACTATTGATGATTCAAAATTC
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAAGACCTGAAGAGGTTCTT-GAAAAAGCACTATTGATGATTCAAAATTC
EST: gi|193308218|gb|FK274885.1|FK274885
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACT                         GTAAAGAACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATT
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAA-GA-CCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATT
EST: gi|207717185|gb|GD697679.1|GD697679
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACT                         GTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC
EST: gi|193670598|gb|FK612720.1|FK612720
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACCTCTGCACCTGATCCTGCCACT                         GTAAGACCTGAAGAGGTTCTTG-AAAAGCACTATTGATGATTCAAAATTCC
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC