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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtctcctctcgggaatttaaattgtttgctgctacttttttctgccttcctcttccctccactccttgaccatgaaccttattaaaattttatgaatttacagGTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCCCAGAAGAATTACCTCTATAAATGTGACCAGTTAAAGTCTATTCGCCAAG

Basic information

species Glycine max
transcript GLYMA20G38620.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207756058|gb|GD729981.1|GD729981
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACT                         GTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC
EST: gi|208340520|gb|GE137874.1|GE137874
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACT                         GTAAGACCTGAAGAGGTTCTTAGAAAAAGCACTATTGATGATTCAAAATTC
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAAGACCTGAAGAGGTTCTT-GAAAAAGCACTATTGATGATTCAAAATTC
EST: gi|193308218|gb|FK274885.1|FK274885
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACT                         GTAAAGAACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATT
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAA-GA-CCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATT
EST: gi|207717185|gb|GD697679.1|GD697679
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACT                         GTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC
EST: gi|193670598|gb|FK612720.1|FK612720
EST:     AAATTGAAAAGCGCTACCTTCGCCTAACCTCTGCACCTGATCCTGCCACT                         GTAAGACCTGAAGAGGTTCTTG-AAAAGCACTATTGATGATTCAAAATTCC
genomic: AAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctc ... gaatttacagGTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcttccctccactccttgaccatgaaccttattaaaattttatgaatttacagGTAAGACCTGAAGAGGTTCTTGAAAAAGCACTATTGATGATTCAAAATTCCCAGAAGAATTACCTCTATAAATGTGACCAGTTAAAGTCTATTCGCCAAG
               ccttgac  putative branch site (score: 4)
                       atgaaccttattaaaa  TA-rich tract