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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTATGGGTTGATTTTTCTTTTCAAATGGCGTCCAGGAGAAAAGGATGATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAGgttattattacttctttaataattaaaagctgatatcataattgtttggtcgtgtatggttttactgatctagccatccatttgtag

Basic information

species Glycine max
transcript GLYMA20G36170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36170.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0044g02040.t01 (Vitis vinifera), 5'ss of exon 5
TGTTTATGGGTTGATTTTTCTTTTCAAATGGCGTCCAGGAGAAAAGGATGATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAGgttattattacttctttaataattaaaagctga-tatcataattgtttggtcgtgtatggttttactgatctagccatccatttgtag
 || ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| | || ||||| || || |||||||| || |||||||| |||||||| |   || | |    | |  ||       ||  || |||| |||     | | | || |    ||   ||  ||  | |       
AGTATATGGATTGATTTTTCTTTTCAAGTGGCGTCCAGGGGAAAAGGATGACCGTCTTGTAATCAAGGACCCAAACCCTAATTTATTTTTTGCCAGTCAGgtga--gtttccttgagatttgttgttgttggagcataataaatgtgcacacctctgtgatacatctttgctgccctcctag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347146|gb|BM892026.1|BM892026
EST:     ATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAG                         GTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAAT
genomic: ATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAGgttattatta ... ccatttgtagGTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAAT
EST: gi|151404722|gb|EV274536.1|EV274536
EST:     ATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAG                         GTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAAT
genomic: ATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAGgttattatta ... ccatttgtagGTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAAT