1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttgtttatctctgtggggacaagcaagacaaaaatcaagtttgtttttgggaaaatcgtacccctgaacctgagttgttgttttttttcttgttcgtagGTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCG
species | Glycine max |
transcript | GLYMA20G36170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTTAACCCAACCGGACCGGGTATCAAAGGCAGAGAAGAGAGTAACAAG GTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCEST: gi|193491924|gb|FK457820.1|FK457820
genomic: ACCTTAACCCAACCGGACCGGGTATCAAAGGCAGAGAAGAGAGTAACAAGgtaccttttt ... ttgttcgtagGTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATC
EST: ACCTTAACCCAACCGGACCGGGTATCAAAGGCAGAGAAGAGAGTAACAAG GTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCEST: gi|151404722|gb|EV274536.1|EV274536
genomic: ACCTTAACCCAACCGGACCGGGTATCAAAGGCAGAGAAGAGAGTAACAAGgtaccttttt ... ttgttcgtagGTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATC
EST: ACCTTAACCCAACCGGACCGGGTATCAAAGGCAGAGAAGAGAGTAACAAG GTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATC
genomic: ACCTTAACCCAACCGGACCGGGTATCAAAGGCAGAGAAGAGAGTAACAAGgtaccttttt ... ttgttcgtagGTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATC
ttttgggaaaatcgtacccctgaacctgagttgttgttttttttcttgttcgtagGTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCG
ttgttgttttttttct CT-rich tract
ttgttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtttatctctgtggggacaagcaagacaaaaatcaagtttgtttttgggaaaatcgtacccctgaacctgagttgttgttttttttcttgttcgtagGTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCG
- - - - - tctgtgg
- - - - - - - - - -acaagca
- - - - - - - - - - - - - - acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacctga