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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCGgtatgcaaagttcatcggttttgtttttgagattaatatttggttggagttgtggctaggattgagggctcacggagtgtcttgtttgatatagatgctgattggtacattcttttagactttgattttgcttctttctcttcccag

Basic information

species Glycine max
transcript GLYMA20G36170.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36170.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g02040.t01 (Vitis vinifera), 5'ss of exon 2
GTTGCTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCGgtatgcaa--agttcatcggttttgtttttgagattaatatttggttggagttgtggctaggattgagggctcacggagtgtcttgtttgatatagatgctgattggtacattcttttagactttgattttgcttctttctcttcccag
    |  | |    |||  ||||||||||||||||||||||||||| ||||| ||||||     | ||  ||  | || | |||    ||  | ||| ||  | | ||    | | |   ||     |   ||| | ||  ||           || |||||                                         
--CACCCCTA--TATTTCTAATCATGTCTTGGTGCACCATTGAGTCTGATCCTGgtatgtttctactttgtctatctt-tctttccccttcctgttttgtatgtgctg-attttgaacaaagaatgaaattagtttttttctt--------ctttgtttggtct---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208253899|gb|GE056493.1|GE056493
EST:     CTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCG                         GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG
genomic: CTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCGgtatgcaaag ... ctcttcccagGTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG
EST: gi|19347146|gb|BM892026.1|BM892026
EST:     CTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCG                         GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG
genomic: CTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCGgtatgcaaag ... ctcttcccagGTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG
EST: gi|193491924|gb|FK457820.1|FK457820
EST:     CTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCG                         GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG
genomic: CTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCGgtatgcaaag ... ctcttcccagGTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG
EST: gi|151404722|gb|EV274536.1|EV274536
EST:     CTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCG                         GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG
genomic: CTTCGAACAGTTTAGAATCATGTCTTGGTGCACCATTGAGTCCGATCCCGgtatgcaaag ... ctcttcccagGTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG