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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAGgttggtgtactatatcagctagtcttgaacttgtaatgatagccatatgttatgataattgatttgtgaacatttgcttgctctcttttcgtgggatttatcctcaatttcag

Basic information

species Glycine max
transcript GLYMA20G36170.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208253899|gb|GE056493.1|GE056493
EST:     GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAG                         GCCTGTTTATGGGTTGATTTTTCTTTTCAAATGGCG
genomic: GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAGgttggtgtac ... tcaatttcagGCCTGTTTATGGGTTGATTTTTCTTTTCAAATGGCG
EST: gi|19347146|gb|BM892026.1|BM892026
EST:     GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAG                         GCCTGTTTATGGGTTGATTTTTCTTTTCAAATGGCGTCCAGGAGAAAAGGA
genomic: GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAGgttggtgtac ... tcaatttcagGCCTGTTTATGGGTTGATTTTTCTTTTCAAATGGCGTCCAGGAGAAAAGGA
EST: gi|193491924|gb|FK457820.1|FK457820
EST:     GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAG                         GCCTGTTTATGGGTTGATTTTTCTTTTCAAATGGCGT
genomic: GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAGgttggtgtac ... tcaatttcagGCCTGTTTATGGGTTGATTTTTCTTTTCAAATGGCGT
EST: gi|151404722|gb|EV274536.1|EV274536
EST:     GTTGAGGAACTATATTCATTGGACCTTGACTCTCTCAACAGCCTTAG                         GCCTGTTTATGGGTTGATTTTTCTTTTCAAATGGCGTCCAGGAGAAAAGGA
genomic: GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAGgttggtgtac ... tcaatttcagGCCTGTTTATGGGTTGATTTTTCTTTTCAAATGGCGTCCAGGAGAAAAGGA