1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttattattacttctttaataattaaaagctgatatcataattgtttggtcgtgtatggttttactgatctagccatccatttgtagGTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAATTCACCAGATATTGATATTGGTCCAGAGCTGACGAAATTGAAAGAATTTA
species | Glycine max |
transcript | GLYMA20G36170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAG GTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAATEST: gi|151404722|gb|EV274536.1|EV274536
genomic: ATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAGgttattatta ... ccatttgtagGTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAAT
EST: ATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAG GTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAAT
genomic: ATCGTGTCGTTATCAAAGATCCCAACCCTAACTTGTTTTTTGCTAGTCAGgttattatta ... ccatttgtagGTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAAT
atatcataattgtttggtcgtgtatggttttactgatctagccatccatttgtagGTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAATTCACCAGATATTGATATTGGTCCAGAGCTGACGAAATTGAAAGAATTTA
tactgat putative branch site (score: 2)
tccattt putative PPT
ataattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattattacttctttaataattaaaagctgatatcataattgtttggtcgtgtatggttttactgatctagccatccatttgtagGTAATTAATAATGCTTGTGCTACCCAAGCGATCTTGTCCATTCTTATGAATTCACCAGATATTGATATTGGTCCAGAGCTGACGAAATTGAAAGAATTTA
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