1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAGgtattttttttcatagtctttagcttggtcttggtggggatgttggtttttgtttcttgtttaggaccttttgcttcccttttggggtgtgtttgggagt...
species | Glycine max |
transcript | GLYMA20G36170.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAGEST: gi|19347146|gb|BM892026.1|BM892026
genomic: GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAGgtattttttt ... gccttggcagGTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAG
EST: GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAGEST: gi|193491924|gb|FK457820.1|FK457820
genomic: GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAGgtattttttt ... gccttggcagGTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAG
EST: GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG GTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAGEST: gi|151404722|gb|EV274536.1|EV274536
genomic: GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAGgtattttttt ... gccttggcagGTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAG
EST: GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAG GTTGAGGAACTATATTCATTGGACCTTGACTCTCTCAACAGCCTTAG
genomic: GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAGgtattttttt ... gccttggcagGTTGAGGAACTGTATTCATTGGACCTTGACTCTCTCAACAGCCTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGTTTACAGAACTCATTCAGCAAATGCAAGTGAAAGGAGTACAGgtattttttttcatagtctttagcttggtcttggtggggatgttggtttttgtttcttgtttaggaccttttgcttcccttttggggtgtgtttgggagt
- - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggtgt