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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAGGACTCGGATGGTAGGCCAGATGAGGAAGTTGCATCTGAGTGTTGGAAAAATCATATGGCTCGGAATGATTCATTGATTGTTGATGTATGCCAGgtgagaatatgtacatgttgtgtcatagacacttattgcatgaagccatgaattataattgatctgccattggtaagctgaataactaaaatttctgcct...

Basic information

species Glycine max
transcript GLYMA20G36020.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0025g02760.t01 (Vitis vinifera), 5'ss of exon 9
AATGAAGGACTCGGATGGTAGGCCAGATGAGGAAGTTGCATCTGAGTGTTGGAAAAATCATATGGCTCGGAATGATTCATTGATTGTTGATGTATGCCAGgtgagaatatgtacatg-------ttgtgtcatagacacttattgcatgaagccatgaattataattgatctgccattggtaagctgaataactaaaatttctgcct
||  ||||| ||  ||||| | |||||||||||||||||    ||||||||||  |||||||  ||||||||||||||||| ||||| ||||| ||||||||||| |  | |   |        || |  | |  |||||  |||  |       | || | |      |  |   ||| |    ||  |   |||||||       
AACAAAGGATTCAAATGGTCGCCCAGATGAGGAAGTTGCTGACGAGTGTTGGAGGAATCATAAAGCTCGGAATGATTCATTAATTGTGGATGTTTGCCAGgtgagcaattttgtttaatttaatttattccttttacact-gttgtgttgtatttttaaattttgcaagtacgaggttgctgc-ttgtttgcttaaaattga-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237362|gb|BE806250.1|BE806250
EST:     GGAAAAATCATATGGCTCGGAATGATTCATTGATTGTTGATGTATGCCAG                         GGTCAATACAAGTCAACATTGGTTTGTCCAGTATGTGGCAAAATTTCAATT
genomic: GGAAAAATCATATGGCTCGGAATGATTCATTGATTGTTGATGTATGCCAGgtgagaatat ... aaatccccagGGTCAATACAAGTCAACATTGGTTTGTCCAGTATGTGGCAAAATTTCAATT
EST: gi|8827229|gb|BE210959.1|BE210959
EST:     GGAATGATTCATTGATTGTTGATGTATGCCAG                         GGTCAATACAAGTCAACATTGGTTTGTCCAGTATGTGGCAAAATTTCAATT
genomic: GGAATGATTCATTGATTGTTGATGTATGCCAGgtgagaatat ... aaatccccagGGTCAATACAAGTCAACATTGGTTTGTCCAGTATGTGGCAAAATTTCAATT