Sequence
atgc intronic sequence ATGC exonic sequenceCTGGATTCACTGTGAAAAAAACCCGGCAAGAAGCTATTTCTTTGTTTTCTTGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTGgtaagattgttttcatgcttttgaaatggactttcatactagactctactgtgttttgagagatattgctgctttactttttatttctcaataactag
Basic information
species | Glycine max |
transcript | GLYMA20G36020.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 12
lower sequence: AT4G10570.1 (Arabidopsis thaliana), 5'ss of exon 11
CTGGATTCACTGTGAAAAAAACCCGGCAAGAAGCTATTTCTTTGTTTTCTTGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTGgtaagattgttttcatgcttttgaaatggactttcatactagactctactgtgttttgagagatattgctgctttactttttatttctcaataactag
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CAAGTTTCTCTGCAAAGAAGACAAGGCAAGAATCGATATCCCTGTTTTCGTGTTTGGAGGCTTTTTTAGCAGAAGAACCTCTGGGACCAGATGACATGTGgtataactcgtagcctgaacttaaaatcacatggactgatatattc------attttaagatttagctttgaccctctttcttacggttctgaatcag
upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 12
lower sequence: AT4G10590.2 (Arabidopsis thaliana), 5'ss of exon 11
CTGGATTCACTGTGAAAAAAACCCGGCAAGAAGCTATTTCTTTGTTTTCTTGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTGgtaagattgttttcatgcttttgaaatggactttcatactagactctactgtgttttgagagatattgctgctttactttttatttctcaataactag
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CAAGTTTCTCTGCAAAGAAGACAAGGCAAGAATCGATATCCCTGTTTTCGTGTTTGGAGGCGTTTTTAGCAGAAGAACCTCTGGGACCAGATGACATGTGgtatagctcgtagcctgaacttaaaat---cacatgaactgaga--tact-cattttaagatttagctttgaccctctttcttacggttctgaatcag
upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0025g02760.t01 (Vitis vinifera), 5'ss of exon 12
CTGGATTCACTGTGAAAAAAACCCGGCAAGAAGCTATTTCTTTGTTTTCTTGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTGgtaagattgttttcatgct-tttgaaatggactttcat---actagactctactgtgttttg-agagatattgctgctttactttttatttctcaataactag----
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ATGGGTTCACCGCAAAGAAGACCAGGCCAGAAGCTATCACCCTGTTTTCATGCTTGGAGGCATTCCTGAAAGAAGAACCTCTAGGACCTCAAGACATGTGgtaagagtattcttaagcccttttcagtgcatagttgtgtaatttcaagctaatgcacttcatatctgttataatgcaatactttttgttccaaattttcaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26269063|gb|CA820126.1|CA820126EST: TGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTG GTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTT
genomic: TGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTGgtaagattgt ... caataactagGTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGATTCACTGTGAAAAAAACCCGGCAAGAAGCTATTTCTTTGTTTTCTTGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTGgtaagattgttttcatgcttttgaaatggactttcatactagactctactgtgttttgagagatattgctgctttactttttatttctcaataactag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG