Sequence
atgc intronic sequence ATGC exonic sequencegtacgtgaccatttccattggcttatatgtattttttctagtgttcaacagtttataaaatggcgtaccatgattgctttactttgaaggcaatttaaattaattttgaaattgtaactagtgtctgatatgcagGGTGAGTTAGCACTTGCATTTGGTGACTTGTTGAGGAAATTGTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGAT
Basic information
species | Glycine max |
transcript | GLYMA20G36020.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G36020.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G32850.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacgtgaccatttccattggcttatatgtattttttctagtgttcaacagtttataaaatggcgtaccatgattgctttactttgaaggcaatttaaattaattttgaaattgtaactagtgtctgatatgcagGGTGAGTTAGCACTTGCATTTGGTGACTTGTTGAGGAAATTGTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGAT
|| | | | ||||| | | | || || | || | ||||| || || ||| ||| | | ||| ||| |||||||| | ||| ||||||||||||| | ||||||||||||||||| || || | || | | |||| || || || || |||| |||||||| ||||
------------------------------------gtaagagcttgagagttttggtatttgtatattata--taattccatgtgaagtca-ttcaaacgaatct--------------atatctctaatgtagGGTGAGCTTGCAATTGCATTTGGTGAACTTTTGAGGAAATTGTGGTCATCTGGACAAAATACAGTTGCGCCGCGCGCTTTTAAGACAAAATTGGCTCGAT
upper sequence: GLYMA20G36020.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0025g02760.t01 (Vitis vinifera), 3'ss of exon 7
gtacgtgaccatttccatt----ggcttatatg-tattttttctagtgttcaacagtttataaaatggcgtaccatgattgctttactttgaaggcaatttaaattaattttgaaattgtaactagtgtctgatatgcagGGTGAGTTAGCACTTGCATTTGGTGACTTGTTGAGGAAATTGTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGAT
||| | | | || ||| | | | | |||| | || || || ||| | ||| | || | |||||||| | | || | || ||| ||| | | | ||| | | ||||||||||| | ||| |||| |||||||| |||||||||||||| ||||| || || || || | ||||||| |||||||| ||| | ||| | || ||||
gtatgaggctatccttatttttcatcctttctactattctgtccaggtttt--ttttttcttgtatgaccagaggggaatcctttacttcttaatcccttcgcgtaaagtttctaat---atccattgta-gctgtgcagGGTGAGCTTGCATTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCCTCTGGCCGGACACCAGTTGCACCTCGTGCATTTAAGGGAAAACTTGCTCGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttgaaggcaatttaaattaattttgaaattgtaactagtgtctgatatgcagGGTGAGTTAGCACTTGCATTTGGTGACTTGTTGAGGAAATTGTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGAT
aatttaaattaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgtgaccatttccattggcttatatgtattttttctagtgttcaacagtttataaaatggcgtaccatgattgctttactttgaaggcaatttaaattaattttgaaattgtaactagtgtctgatatgcagGGTGAGTTAGCACTTGCATTTGGTGACTTGTTGAGGAAATTGTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA