Sequence
atgc intronic sequence ATGC exonic sequencegtaagattgttttcatgcttttgaaatggactttcatactagactctactgtgttttgagagatattgctgctttactttttatttctcaataactagGTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTTGTGGAAATTGCCGGAGATTCTTGTTTTTCACTTGAAACGGTTCTCATAC
Basic information
species | Glycine max |
transcript | GLYMA20G36020.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G36020.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G009655_T01 (Zea mays), 3'ss of exon 11
------------gtaagattgttttc----atgcttttgaaatggactttcatactagactctactgtgttttgagagatattgctgctttactttttatttctcaataactagGTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTTGTGGAAATTGCCGGAGATTCTTGTTTTTCACTTGAAACGGTTCTCATAC
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gttagtaattttctggcactgttaactgagatgcttctgcaaactgccctcat-ctgaaatcaaccttttgttgatgtttgatgg-attttacttttgtcatgcctctaaacagGTACTGTCCTGGGTGCAAGGAACACAGGCAAGCTAGCAAGAAACTGGACTTGTGGAGGTTGCCTGAGATATTGGTAGTTCATTTGAAAAGGTTCTCGTAC
upper sequence: GLYMA20G36020.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv02s0025g02760.t01 (Vitis vinifera), 3'ss of exon 12
gtaagattgttttcatgct-tttgaaatggactttcat---actagactctactgtgttttg-agagatattgctgctttactttttatttctcaataac----tagGTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTTGTGGAAATTGCCGGAGATTCTTGTTTTTCACTTGAAACGGTTCTCATAC
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gtaagagtattcttaagcccttttcagtgcatagttgtgtaatttcaagctaatgcacttcatatctgttataatgcaatactttttgttccaaattttcaatgcagGTATTGCCCTAATTGCAAGGAACATAGACAAGCCACCAAGAAATTGGACTTGTGGAGGTTGCCAGATATTCTTGTGTTTCACTTGAAACGATTTTCATACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26269063|gb|CA820126.1|CA820126EST: TGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTG GTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTT
genomic: TGCTTGGAGGCATTCTTGACTGAAGAACCTCTTGGACCAGATGACATGTGgtaagattgt ... caataactagGTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctactgtgttttgagagatattgctgctttactttttatttctcaataactagGTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTTGTGGAAATTGCCGGAGATTCTTGTTTTTCACTTGAAACGGTTCTCATAC
ctgctttactttttat CT-rich tract
tttactttttatttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagattgttttcatgcttttgaaatggactttcatactagactctactgtgttttgagagatattgctgctttactttttatttctcaataactagGTACTGCCCTAGATGCAAGGAACACAGACAAGCTACAAAGAAGCTTGACTTGTGGAAATTGCCGGAGATTCTTGTTTTTCACTTGAAACGGTTCTCATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT