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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGgttagtttatgaaaattgtcaaagttcctaattttgaaattattgtcaagttaataaactcaagtgctgttattattacttaataccagaacattatctc...

Basic information

species Glycine max
transcript GLYMA20G36020.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g07270.1 (Oryza sativa), 5'ss of exon 7
GTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGgttagtttatgaaaattgtcaaagttcctaattttgaaattattgtcaagt--taataaactcaagtgctgttattattacttaataccagaacattatctc-
 |||||  | || |||||| |||| || || ||| |||||||||  ||| |  | || ||||||||||| |||||||| || || || |||||||||||||||  |         |   | ||   | |   ||  ||||   ||| || |  |  | |     |||  ||  |   ||  |   |     ||| |    |  
TTGGTCAGCTGGTCGAACTTCTATAGCTCCACGTCCATTCAAGACAAAACTTTCTCGTTTTGCTCCACAGTTCAGTGGATACAATCAACATGATTCTCAGgttgctccgaatgtttctcctaaacactt--cttataaatgtctgttaaatggtgctgacactgagttttgc-acctttgttctgttttgtaacttccattaa

upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G009655_T01 (Zea mays), 5'ss of exon 7
GTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGgttagtttatga-aaattgtcaaagttcctaattttgaaattat-tgtcaagttaat--aaactcaagtgctgttattattacttaataccagaacattatctc
 ||||| || || |||||| ||||||| || || ||||| ||    ||| |  | |||||||| || || |||||||| ||||| |||||||||||||||||| || |||   |||  |  |  |     || |  ||   ||  | | |  ||| |      ||| ||  ||  |||  |   || ||   |    ||     
TTGGTCGTCTGGTCGAACTTCTATTGCTCCACGGGCATTTAAATCGAAACTTTCTCGATTTGCCCCCCAGTTCAGTGGATATAATCAGCATGATTCTCAGgttggtctattttaaacagcaatcgacttcaactcagaggatacatattagcttattttggcttcatgta-tgggattggtg--tattaagggtgtgtttggc-

upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G32850.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGgttagtttatgaaaattgtcaaagttcctaatt---ttgaaattattgtcaagttaataaactcaagt---gctgttattattact-taataccagaacattatctc---------------------------------------------
|||||| || || | || | |  |||| || || || || ||||  |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || |||  |||         |  |||  |  ||     | || ||     || ||  |    |||  |   ||| || |  || || | | || || | |  |   |                                             
GTGGTCATCTGGACAAAATACAGTTGCGCCGCGCGCTTTTAAGACAAAATTGGCTCGATTTGCTCCACAATTTAGTGGTTATAATCAGCATGATTCTCAAgtaagtc-atgttctccaaaatggtttatggttaatcagcaagtaagacaaaatttgttgtgtcacttatggcttttttccttcctcttacactaggaaaccagtgccttcgttatgtcttcatgtatgatatgttagctcattgtttccag

upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G10570.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGgttagtttatgaaaattgtcaaagttcctaattttgaaattattgtcaagttaataaactcaagtgctgttattattacttaataccagaacattatctc
 ||||| |||||  | | |||  ||||||| || || || ||||  ||||||||  ||||||| ||||| || |||||||| || |||||||||||||| ||||||     |        ||  |   | ||  || |    |  |||  ||  |     |      |||| || |  ||||                  
ATGGTCATCAGGAAGGAATGCAGTTGCACCACGCGCTTTTAAGACGAAATTGGCTAGATTTGCCCCACAGTTTAGTGGTTACAATCAGCATGATTCTCAAgttagtc----atttcctctaatctgtatgatggtgcataattaatcagattctttgttcctgacattgttgttgt--cttag-----------------

upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G10590.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGgttagt----ttatgaaaattgtcaaagttcctaattttgaaattattgtc----aagttaataaactcaagtgctgttattattacttaataccagaacattatctc--
 ||||| |||||  | |   |  ||||||| || ||||| ||||  ||||||||  ||||||||||||| || |||||||| || |||||||||||||| ||||||    |  |  ||  |||   |      |   || |  |  ||||     |  ||  |    |    |||| |  |  ||    | ||  | |   || ||||  
ATGGTCATCAGGAAGGAACTCAGTTGCACCACGCGCATTTAAGACAAAATTGGCTAGATTTGCTCCACAGTTTAGTGGTTACAATCAGCATGATTCTCAAgttagtcatttcctctaatctgtatgatggtgcataattaaggtctttgttcctgacattgttgttgttctatgctatcctctttgac-agtattatattgttgtctcag

upper sequence: GLYMA20G36020.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0025g02760.t01 (Vitis vinifera), 5'ss of exon 8
GTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGgttagtttatgaaaattgtcaaagttcctaattttga--aattattgtcaagttaataaactcaagtgctgttattattacttaataccagaacattatctc--------------------------------------------------------------------------------
 ||||| || || || ||  |  ||||||| |||||||| ||| | ||| | || ||||||||||| || |||||||| ||||| ||||| |||||||| ||||||        | || |  |   |||   | ||   |||| ||||   |||  | |    |     || |   | |  | || |||  |  |   ||||                                                                                
ATGGTCCTCTGGCCGGACACCAGTTGCACCTCGTGCATTTAAGGGAAAACTTGCTCGATTTGCTCCTCAGTTCAGTGGGTATAATCAGCACGATTCTCAAgttagt--------actgccttatgccctctctgtggttaattgttgtttggttgttca--ctactctttgcttcaaatgttgaaaacccaattacagtctcttcttgtaaatacttttagtatacttcatttgtctacataatcaatttgtttcccctgaataacaaattcttctctctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208302063|gb|GE100819.1|GE100819
EST:     TGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAG                         GAATTGCTTGCCTTTTTATTGGATGGATTGCATGAAGATTTGAATCGTGTA
genomic: TGGCCCGATTTGCTCCACAATTCAGTGGTTATAACCAGCATGATTCTCAGgttagtttat ... gtttttttagGAATTGCTTGCCTTTTTATTGGATGGATTGCATGAAGATTTGAATCGTGTG