1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAGgtgagcaatgtcattcacttcattttccattgacttcttaaatattggtattggctaacacttctttattgccag
species | Glycine max |
transcript | GLYMA20G33910.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAG AGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTTEST: gi|16281494|gb|BI944516.1|BI944516
genomic: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAGgtgagcaatg ... ttattgccagAGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTT
EST: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAG AGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTTEST: gi|16277971|gb|BI942659.1|BI942659
genomic: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAGgtgagcaatg ... ttattgccagAGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTT
EST: AATCTCAAGCATAAATGCTATCCGT-AAAGTATTAGAGTTAGCTTTGAAG AGACAAAGATCTTTATTGATTGTCGCCGAGEST: gi|207844823|gb|GD816660.1|GD816660
genomic: AATCTCAAGCATAAATGCTATC-GTTAAAGTATTAGAGTTAGCTTTGAAGgtgagcaatg ... ttattgccagAGACAAAGATCTTTATTGATTGTCGCCGAG
EST: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAG AGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTTEST: gi|16284788|gb|BI946271.1|BI946271
genomic: AA-TCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAGgtgagcaatg ... ttattgccagAGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTT
EST: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAG AGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTTEST: gi|16278620|gb|BI942998.1|BI942998
genomic: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAGgtgagcaatg ... ttattgccagAGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTT
EST: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAG AGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTT
genomic: AAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAGgtgagcaatg ... ttattgccagAGACAAAGATCTTTATTGATTGTCGCCGAGGATGTGGAAAGTGATGCCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAGgtgagcaatgtcattcacttcattttccattgacttcttaaatattggtattggctaacacttctttattgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG