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gtatgatctcactttatatctcctacttcacagcattagaaatctttctggataatactatctggaatttaccttgatcatgagtcctttttatttttgtttctgatatgttatgtgtaaccatgtactgtctttgtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAG
species | Glycine max |
transcript | GLYMA20G33910.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGT GAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATAEST: gi|208046164|gb|GD848664.1|GD848664
genomic: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGTgtatgatctc ... gtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATA
EST: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGT GAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATAEST: gi|16281494|gb|BI944516.1|BI944516
genomic: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGTgtatgatctc ... gtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATA
EST: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGT GAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATAEST: gi|16277971|gb|BI942659.1|BI942659
genomic: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGTgtatgatctc ... gtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATA
EST: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGT GAACTTGAGGATCCTCTCATTATAATCCATGANAAGAAAATCTCAAGCATAEST: gi|207844823|gb|GD816660.1|GD816660
genomic: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGTgtatgatctc ... gtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATA
EST: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGT GAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAAATCTCAAGCATEST: gi|16284788|gb|BI946271.1|BI946271
genomic: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGTgtatgatctc ... gtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAA-TCTCAAGCAT
EST: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGT GAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATA
genomic: GGGGATACATTTCTCCATATTTCATAACAAACCAGAAGAACCAGAAATGTgtatgatctc ... gtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATA
ttatttttgtttctgatatgttatgtgtaaccatgtactgtctttgtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAG
gtgtaac putative branch site (score: 3)
tctttgt putative PPT
atatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatctcactttatatctcctacttcacagcattagaaatctttctggataatactatctggaatttaccttgatcatgagtcctttttatttttgtttctgatatgttatgtgtaaccatgtactgtctttgtgccaacagGAACTTGAGGATCCTCTCATTATAATCCATGAAAAGAAAATCTCAAGCATAAATGCTATCGTTAAAGTATTAGAGTTAGCTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG