1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgagatgtttgaaaatgtttgatattgatgtattttggtttgttttatgtagctttgcttatcaatatttttcatttgcagTGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAAGGACGATAAAGATGTTCCTGCCATGGGTGGTGGCATGGGTGGCATGGAT
species | Glycine max |
transcript | GLYMA20G33910.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATTATTGATCCATTGAAGGTTATTAGGACCGCCTTGGTTGATGCAGCCAG TGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGEST: gi|15814111|gb|BI786386.1|BI786386
genomic: ATTATTGATCCATTGAAGGTTATTAGGACCGCCTTGGTTGATGCAGCCAGgtgagatgtt ... tcatttgcagTGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTG
EST: ATTATTGATCCATTGAAGGTTATTAGGACCGCCTTGGTTGATGCAGCCAG TGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAAEST: gi|209725420|gb|BW658282.1|BW658282
genomic: ATTATTGATCCATTGAAGGTTATTAGGACCGCCTTGGTTGATGCAGCCAGgtgagatgtt ... tcatttgcagTGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAA
EST: ATTATTGATCCATTGAAGGTTATTAGGACCGCCTTGGTTGATGCAGCCAG TGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAAEST: gi|16344877|gb|BI970472.1|BI970472
genomic: ATTATTGATCCATTGAAGGTTATTAGGACCGCCTTGGTTGATGCAGCCAGgtgagatgtt ... tcatttgcagTGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAA
EST: ATTATTGATCCATTGAAGGTTATTAGGACCGCCTTGGTTGATGCAGCCAG TGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAA
genomic: ATTATTGATCCATTGAAGGTTATTAGGACCGCCTTGGTTGATGCAGCCAGgtgagatgtt ... tcatttgcagTGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAA
gatgtattttggtttgttttatgtagctttgcttatcaatatttttcatttgcagTGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAAGGACGATAAAGATGTTCCTGCCATGGGTGGTGGCATGGGTGGCATGGAT
tattgat putative branch site (score: 3)
tttttcattt putative PPT
ttatcaatatttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgtttgaaaatgtttgatattgatgtattttggtttgttttatgtagctttgcttatcaatatttttcatttgcagTGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCGAAGGACGATAAAGATGTTCCTGCCATGGGTGGTGGCATGGGTGGCATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA