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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCACACAATTGCTTCAAATGCAGGAGTTGAGGGTGCTGTTGTTGTTGGCAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAGgtaagggttctttgtttgccttttcactgttgtgcttacttctgtcaaaagatatagccatttcattgttactgattctgctgtcaattttttcttcctgctccgtgattag

Basic information

species Glycine max
transcript GLYMA20G33910.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33910.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os03g04970.1 (Oryza sativa), 5'ss of exon 16
GTGCACACAATTGCTTCAAATGCAGGAGTTGAGGGTGCTGTTGTTGTTGGCAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAGgtaagggttctttgtttgccttttcactgttgtgcttacttctgtcaaaagatatagccatttcattgttactgattctgctgtcaattttttcttcctgctccgtgattag
||||||||||||||||| ||||| || || || ||  ||||  || ||||||| || ||||||||| || || ||||||| || |||||||| || |||||||  |   |   |||   |  |||  | |||  ||      |   |  |  |||    ||    || || || |  | |                                
GTGCACACAATTGCTTCGAATGCGGGTGTAGAAGGATCTGTCATTATTGGCAAGCTTTTGGAACAGGATAATACTGATCTAGGTTATGATGCTGCTAAAGgtagtgtcacagagttcatccattc--ttttgctctgtgggttactaggatctatctaaatcctgtt-ttgctaacccag--------------------------------

upper sequence: GLYMA20G33910.1 (Glycine max), 5'ss of exon 16
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 5'ss of exon 14
GTGCACACAATTGCTTCAAATGCAGGAGTTGAGGGTGCTGTTGTTGTTGGCAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAGgtaagggttctttgtttgccttttcactgttgtgcttacttctgtcaaaagatatagccatttcattgttactgattctgctgtcaattttttcttcctgctccgtgattag
||  ||||||| ||||||||||| |||||||| ||||||||| |||||||||| || ||||| ||  || | || || || || |||||||| || |||||| ||  |||    |    | |  |     | |  ||   ||||   ||   |  |   |  | | |||    ||     ||                              
GTTTACACAATCGCTTCAAATGCTGGAGTTGAAGGTGCTGTTATTGTTGGCAAGCTCTTGGAGCAAGATAACCCAGACCTCGGTTATGATGCTGCTAAAGgtgagt-ttcacaatccatcatcacttcacttttgttctctctg---aagattgcatttagctaactgtgga-gaacaaactag----------------------------

upper sequence: GLYMA20G33910.1 (Glycine max), 5'ss of exon 16
lower sequence: EFJ20894 (Selaginella moellendorffii), 5'ss of exon 14
GTGCACACAATTGCTTCAAATGCAGGAGTTGAGGGTGCTGTTGTTGTTGGCAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAGgtaagggttctttgtttgccttttcactgttgtgcttacttctgtcaaaagatatagccatttcattgttactgattctgctgtcaattttttcttcctgctccgtgattag
  | | ||||||||| | ||||| ||||| ||||| || || ||||| ||||| |||| ||||||||||||     |  | || || || || || ||||||  |                   |   |     ||||  | ||| |||   | |       | || |||  || ||    || ||                          
ACGTATACAATTGCTGCCAATGCCGGAGTGGAGGGAGCGGTCGTTGTAGGCAAGCTATGGGAACAGAATGACTACAACTTGGGTTACGACGCGGCGAAAGgtgcga------------------cgaggcaaaacttagctttgtgaaagagtctga-----tgatcgttcttggtttg--tgccag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193520772|gb|FK482879.1|FK482879
EST:     CAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAG                         GTGAATATGTTGATATGGTTAAAACTGGAATTATTGATCCATTGAAGGTTA
genomic: CAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAGgtaagggttc ... ccgtgattagGTGAATATGTTGATATGGTTAAAACTGGAATTATTGATCCATTGAAGGTTA
EST: gi|15814111|gb|BI786386.1|BI786386
EST:     CAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAG                         GTGAATATGTTGATATGGTTAAAACTGGAATTATTGATCCATTGAAGGTTA
genomic: CAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAGgtaagggttc ... ccgtgattagGTGAATATGTTGATATGGTTAAAACTGGAATTATTGATCCATTGAAGGTTA
EST: gi|209725420|gb|BW658282.1|BW658282
EST:     CAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAG                         GTGAATATGTTGATATGGTTAAAACTGGAATTATTGATCCATTGAAGGTTA
genomic: CAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAGgtaagggttc ... ccgtgattagGTGAATATGTTGATATGGTTAAAACTGGAATTATTGATCCATTGAAGGTTA
EST: gi|16344877|gb|BI970472.1|BI970472
EST:     CAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAG                         GTGAATATGTTGATATGGTTAAAACTGGAATTATTGATCCATTGAAGGTTA
genomic: CAAACTATTGGAACAGAATGATCCTGATCTTGGATATGATGCAGCCAAAGgtaagggttc ... ccgtgattagGTGAATATGTTGATATGGTTAAAACTGGAATTATTGATCCATTGAAGGTTA