1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTATGTGCCATCAAAGCTCCTGGTTTTGGTGAAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttctgtttgctgaggttactacagtattaaattattccatcttacaaacttgtgaatgatacattttctctatttatctag
species | Glycine max |
transcript | GLYMA20G33910.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAA CTTATCACCGAAGAGCTTGGTTTGAATCTTGAAAAAGTAGACCTGGACTTAEST: gi|24205139|gb|BU964392.1|BU964392
genomic: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACCGAAGAGCTTGGTTTGAATCTTGAAAAAGTAGACCTGGACTTA
EST: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAA CTTATCACCGAAGAGCTTGGTTTGAATCTTGAAAAAGTAGACCTGGACTTAEST: gi|16284788|gb|BI946271.1|BI946271
genomic: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACCGAAGAGCTTGGTTTGAATCTTGAAAAAGTAGACCTGGACTTA
EST: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAA CTTATCACCGAAGAGCTTGGTTTGAATCTTGAAAAAGTAGACCTGGACTTAEST: gi|16278620|gb|BI942998.1|BI942998
genomic: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACCGAAGAGCTTGGTTTGAATCTTGAAAAAGTAGACCTGGACTTA
EST: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAA CTTATCACCGAAGAGCTTGGTTTGAATCTTGAAAAAGTAGACCTGGACTTA
genomic: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACCGAAGAGCTTGGTTTGAATCTTGAAAAAGTAGACCTGGACTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGTGCCATCAAAGCTCCTGGTTTTGGTGAAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttctgtttgctgaggttactacagtattaaattattccatcttacaaacttgtgaatgatacattttctctatttatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT