Sequence
atgc intronic sequence ATGC exonic sequenceTCCAGTTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGgtatgtctcttagtttcttttatgtgatgcaagttactcacagaatatttacctgaaatgttttttgttagttctgggtaaggtaaaggaaataatttcc...
Basic information
species | Glycine max |
transcript | GLYMA20G33190.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g01750.2 (Oryza sativa), 5'ss of exon 8
TCCAGTTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGgtatgtctcttag----tttcttttatgtgatgcaagt-tactcacagaatattta--cctgaaatgttttttgttagttctgggtaaggtaaaggaaataatttcc
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TCCTGCTGTGATTAGCAAACTGCACAAGCTTGTCAACCATAATGGTGGGGTAACATATATACACTGTACCGCTGGACTTGGGAGAGCTCCTGCTGTGACAgtaggtttccatggtcttttcttttttgtttcccaagaattcttataataggtttaggtttacattataatattgtcttcttctttcctgttcagttagt-------
upper sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 8
TCCAGTTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGgtatgtctcttagtttcttttatgtgatgcaagttactca---cagaatatt-tacctgaaatgttttttgttagttctg-ggtaaggtaaaggaaataatttcc
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TCCTGCTGTGGTTAGCAAATTGCACAAACTTATCAACTGTAATGGTGGTGTAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttacatgccacccccccctaatttttgtttcccaagacaacttattgtttcacagattccttatgtttgtctagagatccttttgcttcagtag-----
upper sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G52180.1 (Arabidopsis thaliana), 5'ss of exon 7
TCCAGTTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGgtatgtctcttagtttcttt--tatgtgatgcaagttactcacagaatatttac----ctgaaatgttttttgttagttctgggtaaggtaaaggaaataatttcc---------------------------------------------------------------------------------------
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TCCAGCCGTGGTTGGTACTCTTTACAAAGCTGTTAAGCGAAATGGAGGAGTTACATATGTGCACTGCACTGCTGGAATGGGAAGGGCTCCTGCTGTTGCGgtatgttacagaaacctgttactaagctcttctctttttcccccttttctttccagtattgaaaaaatgtaagactgttgcaaaca--gtagttgtcttaattttgtgcttatttggttgactcatgaaggtatgaacaagttttcacattttgctgactgatactgagaagggatattaatttcattttcag
upper sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 8
TCCAGTTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGgtatgtctcttagtttcttttatgtgatgcaagttact----cacagaatatttacct--gaaatgttttttgttagttctgggta-aggtaaaggaaataatttcc
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TCCAGCTGTGGTGAGCAAATTATACAAGGCGATAAATCGAAATGGAGGTGTGACTTATATACACTGCACAGCTGGACTTGGGAGAGCTCCTGCCGTGGCGgtatgcttctccattttgtctcagaaatatgaattaattctgcctaaggcttttagctaagaaatacgaattgtaattaaatggcacacttctacggaat-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208276236|gb|GE075244.1|GE075244EST: TGCTGGACTTGGAAGAGCTCCAGCTGTTGCG TTGGCTTATATGTTTTGGGTTTTGGGTTATAAACTTAACGAGGCTCATACA
genomic: TGCTGGACTTGGAAGAGCTCCAGCTGTTGCGgtatgtctct ... tttgtctcagTTGGCTTATATGTTTTGGGTTTTGGGTTATAAACTTAACGAGGCTCATACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAGTTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGgtatgtctcttagtttcttttatgtgatgcaagttactcacagaatatttacctgaaatgttttttgttagttctgggtaaggtaaaggaaataatttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaataa