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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttgattcaattatggatacctgattgaattctgtcaaatctagttttgccctgacttctatttttttgtttcccctcaaattaccag

Basic information

species Glycine max
transcript GLYMA20G33190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g01750.5 (Oryza sativa), 5'ss of exon 4
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttgattcaattatggatacctgattgaattctgtcaaatctagttttgccctgacttctatttttttgtttcccctcaaattaccag
| ||||| ||||| |||||  | ||||||||||| |||||||| || ||||||||||| ||||| || ||| |||||||  |      |||  |||    |||   ||  |    |  |||   |   ||   || |  ||| | |  ||   | |  |||  |   |||
TGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAGgttctcaaatatcatctatctcaaccaatttacagaaggaaaaaaaaacactt---cttaactctgtctgattagctgcattcatgtg--cag

upper sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 5
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttgattcaattatggatacctgattgaattctgtcaaatctagttttgccctgacttctatttttttgtttcccctcaaattaccag
  ||||| ||||| |||||| | || |||||||| |||||||| || |||||||||||||| ||||| ||| |||||||  |  |       || |  | ||   | |    ||  ||    |||    || |      |||   ||  |||                  
CGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgcatccttctttagacagaaata---tcgctc---cctacccctgtctgattatctgcattcatgtgcag--------------

upper sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G052546_T04 (Zea mays), 5'ss of exon 3
-----------------------TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttgattcaattatggatacctgattgaattctgtcaaatctagttttgccctgacttctatttttttgtttcccctcaaattaccag
                         ||||| ||||| |||||| | || |||||||| |||||||| || |||||||||||||| ||||| ||| |||||||  |  |       || |  | ||   | |    ||  ||    |||    || |      |||   ||  |||                  
CTTTTCCCCCCATGTTATTATAGCGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgcatccttctttagacagaaata---tcgctc---cctacccctgtctgattatctgcattcatgtgcag--------------

upper sequence: GLYMA20G33190.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttgattcaattatggatacctgattgaattctgtcaaatctagttttgccctgacttctatttttttgtttcccctcaaattaccag
| |||||||||||||||||  |||||||||| || || ||||| |||||||||||||||||||| || |||||||||||  |     ||| | | |   ||  |    ||| | | |    |    || |     ||    |   |||||||||  |||| || |  |||
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctt--taattaggagaagttttt----ttcctttctaagaagatcatttgatttttgtttttcctccaaatggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207690604|gb|GD670632.1|GD670632
EST:     TCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
genomic: TCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttga ... aaattaccagACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTT
EST: gi|193366950|gb|FK330740.1|FK330740
EST:     CCGTCCAGACTTGATTNTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTT
genomic: CCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttga ... aaattaccagACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTT
EST: gi|13312616|gb|BG406267.1|BG406267
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttga ... aaattaccagACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTT