Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctacactccattttccttcttttttcgttatttctctctctcaccctcttttttcattgctccatacagGGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAG

Basic information

species Glycine max
transcript GLYMA20G33190.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193409881|gb|FK375061.1|FK375061
EST:     CCTTCGATACACTTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAG
genomic: CCTTCGATACACTTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctaca ... ctccatacagGGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAG
EST: gi|192321003|gb|FK013505.1|FK013505
EST:     CCTTCGATACACTTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAG
genomic: CCTTCGATACACTTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctaca ... ctccatacagGGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAG
EST: gi|13312616|gb|BG406267.1|BG406267
EST:     CCTTCGATACACTTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAG
genomic: CCTTCGATACACTTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctaca ... ctccatacagGGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcttttttcgttatttctctctctcaccctcttttttcattgctccatacagGGTTTCGTCAATAATTCTCATCAAAATCTAACTATGGCACTCAAG
                       ctctcac  putative branch site (score: 3)
       ttttcgttatttctct  CT-rich tract
     ttttttcgttattt  TA-rich tract