1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GTCAAGGAACTAGCTGCAAAGGCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttactacttatactgtcatgcaaccttggaattccccatatatcatatttcttgagcaatatttactgtgccaaaagtaataattctgagctttgcgcaatgccttaatgcag
species | Glycine max |
transcript | GLYMA20G33080.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAAEST: gi|8403681|gb|BE059377.1|BE059377
genomic: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
EST: GCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAAEST: gi|26058095|gb|CA801009.1|CA801009
genomic: GCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
EST: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTEST: gi|6227678|gb|AW156277.1|AW156277
genomic: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTT
EST: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAAEST: gi|192310210|gb|FK000690.1|FK000690
genomic: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
EST: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAAEST: gi|51344360|gb|CO985093.1|CO985093
genomic: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
EST: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAAEST: gi|57575389|gb|CX548364.1|CX548364
genomic: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
EST: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAAEST: gi|209716666|gb|BW654299.1|BW654299
genomic: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
EST: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAAEST: gi|120532018|gb|EH260151.1|EH260151
genomic: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
EST: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAAEST: gi|58023434|gb|CX710175.1|CX710175
genomic: GCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
EST: CACGTGCTGGCAAA-TGNAAGCCACATGAATTCCAAGGGGGAACTTTTAG CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
genomic: CACGTGCTGGCAAATTG-AAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttac ... cttaatgcagCATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGGAACTAGCTGCAAAGGCACGTGCTGGCAAATTGAAGCCACATGAATTCCAAGGGGGAACTTTTAGgtgagtttactacttatactgtcatgcaaccttggaattccccatatatcatatttcttgagcaatatttactgtgccaaaagtaataattctgagctttgcgcaatgccttaatgcag
- - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - TGAAGC