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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACTGGAATGTTGAGACGGGTGAGGTGGTTTTAAATGATTCTATTGACATATGCATAGCAGTTGCCACTGAGAAGgtaattgatggtgtttaactgtcggtatgatagtatcattatacaaaatactcaaaccttttgtttgactatag

Basic information

species Glycine max
transcript GLYMA20G33080.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058095|gb|CA801009.1|CA801009
EST:     TGGTTTTAAATGATTCTATTGACATATGCATAGCAGTTGCCACTGAGAAG                         GGCTTGATGACTCCAATAATAAAAAATGCTGATCAGAAGACAATATCTGCT
genomic: TGGTTTTAAATGATTCTATTGACATATGCATAGCAGTTGCCACTGAGAAGgtaattgatg ... ttgactatagGGCTTGATGACTCCAATAATAAAAAATGCTGATCAGAAGACAATATCTGCT
EST: gi|6227678|gb|AW156277.1|AW156277
EST:     AGCAGTTGCCACTGAGAAG                         GGCTTGATGACTCCAATAATAAAAAATGCTGATCAGAAGACAATATCTGCT
genomic: AGCAGTTGCCACTGAGAAGgtaattgatg ... ttgactatagGGCTTGATGACTCCAATAATAAAAAATGCTGATCAGAAGACAATATCTGCT
EST: gi|57575389|gb|CX548364.1|CX548364
EST:     GCAGTTGCCACTGAGAAG                         GGCTTGATGACTCCAATAATAAAAAATGCTGATCAGAAGACAATATCTGCT
genomic: GCAGTTGCCACTGAGAAGgtaattgatg ... ttgactatagGGCTTGATGACTCCAATAATAAAAAATGCTGATCAGAAGACAATATCTGCT
EST: gi|120532018|gb|EH260151.1|EH260151
EST:     TGGTTTTAAATGATTCTATTGACATATGCATAGCAGTTGCCACTGAGAAG                         GGCTTGATGACTCCAATAATAAAAAATGCTGATCAGAAGACAATATCTGCT
genomic: TGGTTTTAAATGATTCTATTGACATATGCATAGCAGTTGCCACTGAGAAGgtaattgatg ... ttgactatagGGCTTGATGACTCCAATAATAAAAAATGCTGATCAGAAGACAATATCTGCT