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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATCGCCAAGAGATTATTGGACTCAAAACAAAATACACCACACTTGTATTTATCATCAGgttttgattcccaatgccttgcataatgcatattatcgcaaactaatttatgtttgcgctgactaattaatatatattttgattgccatgtatcag

Basic information

species Glycine max
transcript GLYMA20G33080.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33080.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv13s0074g00150.t01 (Vitis vinifera), 5'ss of exon 14
GTGATCGCCAAGAGATTATTGGACTCAAAACAAAATACACCACACTTGTATTTATCATCAGgttttgattcccaatgccttgcataatgcatattatcgcaaactaatttatgtttgcgctgactaattaatatatattttgattgccatgtatcag
||||| || |  || || ||||| |||||||||||||| ||||| || |||||||| ||||||||       | || |  |     ||   | |||     ||||||  |||  |    ||||   |||  |   | |||  |  |           
GTGATAGCAACAAGGTTGTTGGAATCAAAACAAAATACTCCACATTTATATTTATCCTCAGgtttaagaatactatacacttttctatatttgttactattaactaagctatagt----ctgaaagatt--tgattgtttctacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058095|gb|CA801009.1|CA801009
EST:     GAGATTATTGGACTCAAAACAAAATACACCACACTTGTATTTATCATCAG                         ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAG
genomic: GAGATTATTGGACTCAAAACAAAATACACCACACTTGTATTTATCATCAGgttttgattc ... catgtatcagATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAG
EST: gi|192310209|gb|FK000689.1|FK000689
EST:     GAGATTATTGGACTCAAAACAAAATACACCACACTTGTATTTATCATCAG                         ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAG
genomic: GAGATTATTGGACTCAAAACAAAATACACCACACTTGTATTTATCATCAGgttttgattc ... catgtatcagATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAG
EST: gi|17022005|gb|BM093039.1|BM093039
EST:     GAGATTATTGGACTCAAAACAAAATACACCACACTTGTATTTATCATCAG                         ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTA
genomic: GAGATTATTGGACTCAAAACAAAATACACCACACTTGTATTTATCATCAGgttttgattc ... catgtatcagATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTA