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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAGgtatggaccagtaataaattttccttggcatgagtcagatgttatcctcacctagtgggataaggcttattgttgttgttgatgtgttaaatgttatactcttagtcatgtgttttatggcaatgtgatatatttgttccttgattgcag

Basic information

species Glycine max
transcript GLYMA20G33080.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33080.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0074g00150.t01 (Vitis vinifera), 5'ss of exon 15
ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAGgtatggaccagtaataaattttcct-tggcatgagtcagatgttatcctcacctagtgggataaggcttattgttgttgttgatgtgttaaatgttatactcttagtcatgtgttttatggcaatgtgatatatttgttccttgattgcag
||||  |||||||||| ||||||||| || ||||||| |||||||||||  |  | ||||   || || | |  | |  ||    | |||| |   | |        |||| |||||  |  |  || | | ||     ||| |                                                    
ATGTTATACTGGATCCCCTTCTTTCCTTTAGAAAGGAGCTTAAAGgtataaaata-taatcttttatcttgttactttggtt---tcttatgcattcttgtaatttgaaggattattcatccttctg-tcttttctcaattacag---------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058095|gb|CA801009.1|CA801009
EST:     ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAG                         AGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTGTCAAAGTTGTAG
genomic: ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAGgtatggacca ... ttgattgcagAGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTGTCAAAGTTGTAG
EST: gi|192310209|gb|FK000689.1|FK000689
EST:     ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAG                         AGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTGTCAAAGTTGTAG
genomic: ATGTCGTACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAGgtatggacca ... ttgattgcagAGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTGTCAAAGTTGTAG
EST: gi|120532018|gb|EH260151.1|EH260151
EST:     ACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAG                         AGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTGTCAAAGTTGTAG
genomic: ACTGGATCCTCTTCTTTCCCTTCGAAAGGATCTTAAAGgtatggacca ... ttgattgcagAGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTGTCAAAGTTGTAG