1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tttacagatgagctttatttgtactcctcctttcttcttcctgataaagtttcactttctagctgactaatttatatctgaatggggtggtgggcactagGTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACA
species | Glycine max |
transcript | GLYMA20G33080.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGATCGAGACAGACAAAGCTACACTTGAATTTGAAACTCTTGAAGAGGG GTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGEST: gi|14259393|gb|BG882301.1|BG882301
genomic: GAGATCGAGACAGACAAAGCTACACTTGAATTTGAAACTCTTGAAGAGGGgtaataatct ... tgggcactagGTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGG
EST: GAGATTGAGACAGACAAAGCTACACTTGAATTTGAAACTCTTGAAGAGGG GTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGG
genomic: GAGATCGAGACAGACAAAGCTACACTTGAATTTGAAACTCTTGAAGAGGGgtaataatct ... tgggcactagGTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGG
aaagtttcactttctagctgactaatttatatctgaatggggtggtgggcactagGTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACA
gactaat putative branch site (score: 2)
taatttatatctgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacagatgagctttatttgtactcctcctttcttcttcctgataaagtttcactttctagctgactaatttatatctgaatggggtggtgggcactagGTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - ttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggtgg