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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACAgtaagtgtggaaatgttgtgcaattttgtaagtttcttcaaatgcaatatgaaatgtgtcagggtgaggattgaggtctaacaatttatgcatcttcttt...

Basic information

species Glycine max
transcript GLYMA20G33080.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310209|gb|FK000689.1|FK000689
EST:     CTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACA                         GTTGAAGATGCAAGTGATATTGAAGCTATAATGAACTCTGTTAGCAGAAGT
genomic: CTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACAgtaagtgtgg ... tttctacaagGTTGAAGATGCAAGTGATATTGAAGCTATAATGAACTCTGTTAGCAGAAGT
EST: gi|15288040|gb|BI471931.1|BI471931
EST:     CTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACA                         GTTGAAGATGCAAGTGATATTGAAGCTATAATGAACTCTGTTAGCAGAAGT
genomic: CTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACAgtaagtgtgg ... tttctacaagGTTGAAGATGCAAGTGATATTGAAGCTATAATGAACTCTGTTAGCAGAAGT
EST: gi|14259393|gb|BG882301.1|BG882301
EST:     CTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACA                         GTTGAACATGCAAGTGATATTGAAGCTATAATGAACTCTGTT
genomic: CTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACAgtaagtgtgg ... tttctacaagGTTGAAGATGCAAGTGATATTGAAGCTATAATGAACTCTGTT
EST: gi|17022005|gb|BM093039.1|BM093039
EST:     CTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACA                         GTTGAAGATGCAAGTGATATTGAAGCTATAATGAACTCTGTTAGCAGAAGT
genomic: CTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACAgtaagtgtgg ... tttctacaagGTTGAAGATGCAAGTGATATTGAAGCTATAATGAACTCTGTTAGCAGAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTGGCAGTTGGACATCCTATTGCAATAACAgtaagtgtggaaatgttgtgcaattttgtaagtttcttcaaatgcaatatgaaatgtgtcagggtgaggattgaggtctaacaatttatgcatcttcttt

- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgagg