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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCTTCGTGGTGCAGCAATAAAGGGTCATCTTTCAATGGTTCCTATCGATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGgtatacattgaaacagattaatttattttaaggtggtagtagacttatttatacggtatttattctcacttttgtattttag

Basic information

species Glycine max
transcript GLYMA20G32430.2
intron # 49
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32430.1 (Glycine max), 5'ss of exon 49
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 47
CAAGCTTCGTGGTGCAGCAATAAAGGGTCATCTTTCAATGGTTCCTATCGATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGgtatacattgaaacagattaatttattttaaggtggtag-tagacttatttatacggtattta-ttctcacttttgtattttag
 |||||||||||| ||||||| || ||||| ||||||||||||||||| |||||| ||||||| || |||||  | || |||||||| ||||||||| ||||| | |   ||| | ||   ||| || |        |    | | |    || |  | |||| ||   ||| |||| || |||
AAAGCTTCGTGGTACAGCAATCAAAGGTCACCTTTCAATGGTTCCTATAGATGCTGAACCTCAGCCAATCATTTTGGCATACATTGATCTTAATCTTCAGgtaaaaa---aaatacatccttttgttgttccacaacaaactgtcatggacatcctttttttaattgatactattgtgttctag

upper sequence: GLYMA20G32430.1 (Glycine max), 5'ss of exon 49
lower sequence: GRMZM2G068755_T01 (Zea mays), 5'ss of exon 48
CAAGCTTCGTGGTGCAGCAATAAAGGGTCATCTTTCAATGGTTCCTATCGATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGgtatacattgaaacagattaatttattttaaggtggtagtagacttatttatacggtatttattctcacttttgtattttag--------------------------------------------------------------------
 |||||||| ||  | |||||||||||||| ||||||||||||||||| |||||| ||||||| || || || || || |||||||| || |||||  ||||| |  ||| ||   |  |   | || |   || || ||||||   |  |  || ||  | |  | ||  ||| |                                                                          
GAAGCTTCGGGGAACGGCAATAAAGGGTCACCTTTCAATGGTTCCTATAGATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTCAATCTCCAGgtagaacttgcaa--aacca--ctgttct---gttgttgtagacccttgcagccgctagat-tgttgacccttgcaaaaccaccattagcaacaagattcttcgcaaagccttttttttcttggtaaccaacattgttcggttgttgtag

upper sequence: GLYMA20G32430.1 (Glycine max), 5'ss of exon 49
lower sequence: GRMZM2G009849_T02 (Zea mays), 5'ss of exon 30
CAAGCTTCGTGGTGCAGCAATAAAGGGTCATCTTTCAATGGTTCCTATCGATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGgta---tacattgaaacagattaatttattttaaggtggtagtagactt-----atttatacggtatttattctcacttttgtattttag
 |||||||| ||  | |||||||||||||| ||||| ||||||||||| |||||| ||||||| || || || || || |||||||| ||||||||  |||||    |     || ||   | ||| |    |   |    | || |||      ||| |  ||||   |   |   |      || |||
GAAGCTTCGGGGAACGGCAATAAAGGGTCACCTTTCGATGGTTCCTATAGATGCTGAACCTCAGCCAATAATTCTAGCATACATTGATCTTAATCTCCAGgtagaacatgcaaaaccactgttattaacaacattcttcctgcagcctttctttttttctttggtaaccaacattgttcggtcgttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252146|gb|BG363049.1|BG363049
EST:     ATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAG                         ACTTTGGCTGCTGCAAGAATGTTGACTGCATCTGGTCCTGGGGGACAAAAC
genomic: ATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGgtatacattg ... tgtattttagACTTTGGCTGCTGCAAGAATGTTGACTGCATCTGGTCCTGGGGGACAAAAC
EST: gi|207829014|gb|GD797724.1|GD797724
EST:     ATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAG                         ACTTTGGCTGCTGCAAGAATGTTGACTGCAT
genomic: ATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGgtatacattg ... tgtattttagACTTTGGCTGCTGCAAGAATGTTGACTGCAT
EST: gi|10231247|gb|BE800063.1|BE800063
EST:     TGCTAAACGCT-ATCCCATCATCCTTGCCTACATAGAACTTAATCTTGAG                         ACTTTGGCTGCTGCTAGAATAGT-GACTGCATCTGG
genomic: TGCTAAAC-CTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGgtatacattg ... tgtattttagACTTTGGCTGCTGCAAGAAT-GTTGACTGCATCTGG
EST: gi|6566454|gb|AW234099.1|AW234099
EST:     ATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAG                         ACTTTGGCTGCTGCAAGAATGTTGACTGCATCTGGTCCTTGGGGACAAAAC
genomic: ATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGgtatacattg ... tgtattttagACTTTGGCTGCTGCAAGAATGTTGACTGCATCTGGTCCTGGGGGACAAAAC