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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCACAAGAATTGGAAGGTGCGCAACGAGGCGAACATCGATTTGGCTTCGCTCTGCGACTCCATCACCGATCCCAAGGACTCTCGCATCCGCGAATTCGgtcggtgtttttttttttttttttataaattttctcttcgcctagggttttcgcgttttccgattcgctccctgatctccgtgtggcggatctggatgcggttttcttccgagttgttacttgttatggtacattttcgtttggtggatcttgattcgtggttttgtttttctgtttttttcttttttgaatttggcag

Basic information

species Glycine max
transcript GLYMA20G32430.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32430.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g60040.1 (Oryza sativa), 5'ss of exon 1
TTCCACAAGAATTGGAAGGTGCGCAACGAGGCGAACATCGATTTGGCTTCGCTCTGCGACTCCATCACCGATCCCAAGGACTCTCGCATCCGCGAATTCGgtcggtgtttttttttttttttttataaattttctcttcgcctagggttttcgcgttttccgattcgctccctgatctccgtgtggcggatctggatgcggttttcttccgagttgttacttgttatggtacattttcgtttggtggatcttgattcgtggttttgtttttctgtttttttcttttttgaatttggcag
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CAGCACAAGAACTGGAAGGTGCGGAACGACGCCAACATCGATCTCGCCGCCCTCTGCGACTCAATCACCGACCCCAAGGACGCCCGCCTCCGCGAGTTCGgtgaga--------taagctcccggtgg-----ctcccgatccacgcccattgcgcgctcggatccgcgccctgcttgat-tctcgctgtttcgtctcgttttttttttcgaggggt-----gttttagcg---ttagatctgaaggccctt------ttgtcttttccgccggtggttag------------------

upper sequence: GLYMA20G32430.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g60050.1 (Oryza sativa), 5'ss of exon 1
TTCCACAAGAATTGGAAGGTGCGCAACGAGGCGAACATCGATTTGGCTTCGCTCTGCGACTCCATCACCGATCCCAAGGACTCTCGCATCCGCGAATTCGgtcggtgtttttttttttttttttataaattttctcttcgcctagggttttcgcgttttccgattcgctccctgatctccgtgtggcggatctggatgcggttttcttccgagttgttacttgttatggtacattttcgtttggtggatcttgattcgtggttttgtttttctgtttttttcttttttgaatttggcag
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CGGCACAAGAGCTGGAAGGTGCGGCGCGACGCCAACGTCGACCTCGCCGCCCTCTGCGACTCCATCGCCGACCCCAAGGACGCCCGCCTCCGCGAGTTCGgtcagt----ttagttacactctcccagcgtctccc---------gaatcttgcgcgatcggatccgcgtcgtctgaactctgaaatgcattctaatttgccttttcttttctttttttttttttgcgccggtggttag------------------------------------------------------------