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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTAATCCATTTACCAAatatcctttatacgtgccttacataaatacatatgagcatgcatgtcattatatatactatggaaaatgtcattcaacataaggaatggctttgtttcca...

Basic information

species Glycine max
transcript GLYMA20G32260.1
intron # 9
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32260.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G54830.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGGTTAATCCATTTACCAAatatcctttat------------acgtgccttacataaatacatatgagcatg-catgtcattatatatactatg----gaaaatgtcat----tcaacataaggaatggc--tttgtttcca------------
|| ||||||||||||||||||||||||||||            |    | || |||  ||   | | |   || |||    ||||  ||| |||     ||||||    |    | || | || ||| |    | || ||  |            
GTTGTTAATCCATTTACCAAATATCCTTTATCAAGAAATATTCAGAGACTTTTCATTTATCTCTgtaattttgtcataagcttattcataatataaactgaaaattgtgtggccttaatagaaagaaagcacatatgctttgacattatctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019707|gb|CX706449.1|CX706449
EST:     GGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTTTGGAGGAGTTGATACC
genomic: GGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|209702870|gb|BW655992.1|BW655992
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|16104867|gb|BI892607.1|BI892607
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|209702922|gb|BW656019.1|BW656019
EST:     ACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: ACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|105638003|gb|DY577271.1|DY577271
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|9819649|gb|BE555162.1|BE555162
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|14125144|gb|BG789582.1|BG789582
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTGGGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|58017037|gb|CX703779.1|CX703779
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|193410256|gb|FK377167.1|FK377167
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|208151014|gb|GD946047.1|GD946047
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGANACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
EST: gi|15202138|gb|BI425242.1|BI425242
EST:     CTACGGTGGTTAATCCATTTACCAA                         GTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ttagcttcacGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACC