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...aagaagctatgttaaaaatttggaaaaaaatcaccaaccaattgttgtgtagtgcatgaattgtatactcatgctgttgttgtgattgatgatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTGGGCACACCTTCTCTGTCAAGACTAAGCAGTTCTTTTCTTTCTACATCA
species | Glycine max |
transcript | GLYMA20G32260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACGG GCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTEST: gi|209710223|gb|BW653601.1|BW653601
genomic: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAGgtcaacccct ... gatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTT
EST: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAG GCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTEST: gi|209702921|gb|BW656018.1|BW656018
genomic: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAGgtcaacccct ... gatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTT
EST: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAG GCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTEST: gi|15199491|gb|BI423857.1|BI423857
genomic: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAGgtcaacccct ... gatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTT
EST: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAG GCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTEST: gi|27808915|gb|CB063337.1|CB063337
genomic: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAGgtcaacccct ... gatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTT
EST: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAG GCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTEST: gi|209702869|gb|BW655991.1|BW655991
genomic: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAGgtcaacccct ... gatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTT
EST: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAG GCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTT
genomic: CCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAGgtcaacccct ... gatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTT
tgtgtagtgcatgaattgtatactcatgctgttgttgtgattgatgatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTGGGCACACCTTCTCTGTCAAGACTAAGCAGTTCTTTTCTTTCTACATCA
gattgat putative branch site (score: 4)
aattgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaagctatgttaaaaatttggaaaaaaatcaccaaccaattgttgtgtagtgcatgaattgtatactcatgctgttgttgtgattgatgatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTGGGCACACCTTCTCTGTCAAGACTAAGCAGTTCTTTTCTTTCTACATCA
- - agctatg
- - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - -ccaacca
- - - - - - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg