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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcctttcagcttatcttatctgttcttgctcctagagttactgaccttagcattttactaattaaaaccaaccttgatgacag

Basic information

species Glycine max
transcript GLYMA20G32260.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32260.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 12
GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcctttcagcttatcttatctgttcttgctcctagagttactgaccttagcattt---tactaattaaaacca---accttgatgacag----------------------
|| |||||||| ||||||||||||| || |||||||||||||| |||||||   ||  |||  | |||||  ||     | | ||   |  | |||||  |||||   | | |||   || ||   || |  |||  |                       
GTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTAgtaagttttcttgtgctgtttttatcatttagcttttccagcaat-tttaccttcccatttgttttcaaatgggaaacatatacttccatgctaatagatatctattttttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019707|gb|CX706449.1|CX706449
EST:     GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT                         ACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
genomic: GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcct ... ttgatgacagACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
EST: gi|209702870|gb|BW655992.1|BW655992
EST:     GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT                         ACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
genomic: GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcct ... ttgatgacagACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
EST: gi|16104867|gb|BI892607.1|BI892607
EST:     GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT                         ACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
genomic: GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcct ... ttgatgacagACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
EST: gi|209702922|gb|BW656019.1|BW656019
EST:     GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT                         ACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
genomic: GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcct ... ttgatgacagACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
EST: gi|9819649|gb|BE555162.1|BE555162
EST:     GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT                         ACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
genomic: GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcct ... ttgatgacagACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
EST: gi|58017037|gb|CX703779.1|CX703779
EST:     GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT                         ACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
genomic: GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcct ... ttgatgacagACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
EST: gi|209710224|gb|BW653602.1|BW653602
EST:     GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT                         ACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
genomic: GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcct ... ttgatgacagACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
EST: gi|15202138|gb|BI425242.1|BI425242
EST:     GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT                         ACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG
genomic: GTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTgtaagttcct ... ttgatgacagACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTG