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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCTTTATGGTTACTGCTACTCTGGACATGCTGTGTTCCCAAACATTTATACATCCATGGCAAATCCAAACCAATTCCCTGGAGTCCTCTTAGCATGgtaaatgacttttagctataatctataactcagctgccactagtcctttcactaaatattaaatctcctcaagtcctgtacaaattgcaatttacaaata...

Basic information

species Glycine max
transcript GLYMA20G32260.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32260.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G39130.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGGTCTTTATGGTTACTGCTACTCTGGACATGCTGTGTTCCCAAACATTTATACATCCATGGCAAATCCAAACCAATTCCCTGGAGTCCTCTTAGCATGgtaaa------tgacttttagc-------tataatctataac---tcagctgccactagtcc----tttcactaaatattaaatctcctcaagtcctgtacaaattgcaatttacaaata-
| || || ||||||||||||||||| ||||||||||| ||||| || |||||||| || ||||| || |||   |||| |||||  || |||||  ||||||||       |  |||| | |       |||  |||| |||   ||  ||  | ||  | |    ||  |  ||||||| || |   |  | |     | | ||||  | ||      | 
TAGGACTCTATGGTTACTGCTACTCAGGACATGCTGTTTTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGgtaagcttatgtcgctttaaacaagttcttatcttctacaacgcttcgactttcgcttatgcaaacttcaagaaaatattcaaccattttga-tagcagaaagattgataattttgtgcag

upper sequence: GLYMA20G32260.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 8
TTGGTCTTTATGGTTACTGCTACTCTGGACATGCTGTGTTCCCAAACATTTATACATCCATGGCAAATCCAAACCAATTCCCTGGAGTCCTCTTAGCATGgta---aatgacttttagctata--atctataactcagctgccacta--gtcctttcactaaatattaaatctcctcaagtcctgtacaaattgcaatttacaaata
||||||| ||||| ||||| || || || |||||||| ||||||||||| ||||| || |||||||| |||| ||||| |||   ||| ||||||    ||||    | ||   | | ||||   |  || || |  | |     |    |  ||| | |    | || | ||    |      |||    ||  |||||       
TTGGTCTCTATGGCTACTGTTATTCAGGGCATGCTGTTTTCCCAAACATCTATACTTCAATGGCAAAACCAAGCCAATACCCATCAGTACTCTTAATTAGgtatttgaagatgatgaactatcttacttacaattgggtttttttttttatttttttatttgtcactagaccttagtat-cagggtatgtgtt-taattttt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208334988|gb|GE127081.1|GE127081
EST:     TATACATCCATGGCAAATCCAAACCAATTCCCTGGAGTCCTCTTAGCATG                         TTTTGGAATTTGTACCTTGTTGTATGCTGGAGCTGCTGTATTGGGATACAC
genomic: TATACATCCATGGCAAATCCAAACCAATTCCCTGGAGTCCTCTTAGCATGgtaaatgact ... tttctcacagTTTTGGAATTTGTACCTTGTTGTATGCTGGAGCTGCTGTATTGGGATACAC
EST: gi|16104867|gb|BI892607.1|BI892607
EST:     CCAATTCCCTGGAGTCCTCTTAGCATG                         TTTTGGAATTTGTACCTTGTTGTATGCTGGAGCTGCTGTATTGGGATACAC
genomic: CCAATTCCCTGGAGTCCTCTTAGCATGgtaaatgact ... tttctcacagTTTTGGAATTTGTACCTTGTTGTATGCTGGAGCTGCTGTATTGGGATACAC
EST: gi|193410256|gb|FK377167.1|FK377167
EST:     AAACCAATTCCCTGGAGTCCTCTTAGCATG                         TTTTGGAATTTGTACCTTGTTGTATGCTGGAGCTGCTGTATTGGGATACAC
genomic: AAACCAATTCCCTGGAGTCCTCTTAGCATGgtaaatgact ... tttctcacagTTTTGGAATTTGTACCTTGTTGTATGCTGGAGCTGCTGTATTGGGATACAC