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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattactatgcttggaggaatgatttcaactgggtatggcaaatggactttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT

Basic information

species Glycine max
transcript GLYMA20G32030.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 3'ss of exon 9
gtaattactatgcttggaggaatgatttcaactgggtatggcaaatggactttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT
         ||   || |    |  ||    | ||   |  |   | | || | ||| |   | | |||           ||||||||| ||||||||||||| || ||||||||||||||||| || ||||||||||| || || ||||| ||    |||||||| |  ||  | || || || ||
------gtaatatctgcaccttttcttcatgccggtagtctcgtcttgcctgtcattttacaaattaca-----------tattcagGCATGTTTCCAAATCACATTCCAAATCCTGAGGACAAAACTGCAATGAAAGCCATTACACAAGCTGTGGCCGATAACAAGGCAGACTTGGGCATCATATT

upper sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G069676_T03 (Zea mays), 3'ss of exon 9
gtaattactatgcttggaggaatgatttcaactgggtatggcaaatggactttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT
|||||  || || |        |   ||||      |||   |  |    ||   ||  |    |  |  ||        |||| ||| |||||||| ||||| || || || ||||||||||| || ||||||||   ||| || |||||||| ||||||||||| |  ||  | || || || ||
gtaatagct-tgtt------gttttcttcatgcaattataatacct---tttgcttttctcccatttcttatacaccacatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATT

upper sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G17530.3 (Arabidopsis thaliana), 3'ss of exon 9
gtaattactatgcttggaggaatgatttcaactgggtatggcaaatggac--tttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT
||| |  |||||| |    | ||   ||   ||   | |     || |    |  ||   ||||  | |               ||||||  |||| |||||||||||||| ||||| || || ||| | |||||| ||||||||||| | || || |||||||| || | |||| | || || || ||
gtattatctatgcgtatgagtatatcttgccctatttttaattgattgttgatcaaaccttttggatgat--------------ttcagGTATGTTCCCAAATCATATCCCTAATCCGGAAGATAAGGCGGCAATGGAAGCTATAACCAAGGCTGTTCTTGATAATAAGGCTGATTTGGGTATCATCTT

upper sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 3'ss of exon 9
gtaattactatgcttggaggaatgatttcaactgggtatggcaaatggactttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT
|||||   ||    |     ||  |   | ||      |      |  |  |||||   ||     | | ||   | |     |||||||||||||| |||||||| || || || ||||| |||  |||||||||||| || ||||| || ||||| |  ||| | | |||||| |||||||| ||
gtaatatttaaatcta----aacaacccccacccccccttttttttc-atattaatggatttgaagaaagatctttgtgtggatcagGCTTGTTTCCGAATCATATTCCTAACCCGGAGGATAAGGAAGCAATGAAAGCCATCACCCAGGCTGTCCTAGCAAACCAGGCTGATCTGGGAATTATCTT

upper sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ15375 (Selaginella moellendorffii), 3'ss of exon 7
gtaattactatgcttggaggaatgatttcaactgggtatggcaaatggactttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT
                   | | ||    ||||  || ||  ||||| | |||    |||           |||  |||     ||||| ||||||| |||||||| || |||||||||||||||| ||||||| ||||  | ||    || || ||  |  |||| |  ||  | || || || ||
-------------------gtacga----aactctgtttgagaaatgaagtttttaccttc----------tggactttgg---cagGCATGTTTCCGAATCATATTCCCAATCCTGAGGACAAGAAAGCAATGGAAGCCGTGACAAGTGCTGTTCTCAAGCACAAGGCGGACTTGGGGATCATATT

upper sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ24972 (Selaginella moellendorffii), 3'ss of exon 7
gtaattactatgcttggaggaatgatttcaactgggtatggcaaatggactttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT
                   | | ||    ||||  || ||  ||||| | |||             |||  |||  |||     ||||| ||||||| |||||||| || |||||||||||||||| ||||||| ||||  | ||    || || ||  |  |||| |  ||  | || || || ||
-------------------gtacga----aactctgtttgagaaatgaagtttgt-----------acatctggactttgg---cagGCATGTTTCCGAATCATATTCCCAATCCTGAGGACAAGAAAGCAATGGAAGCCGTGACAAGTGCTGTTCTCAAGCACAAGGCGGACTTGGGGATCATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtatggcaaatggactttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT
                             gagtaac  putative branch site (score: 2)
                                          cttttctattc  putative PPT
                  tttaattcttt  TA-rich tract