1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGgtgggtgatattaatttttttcatatcaattatttgtgttttttattagctgagtactggtaaagtctatttgctttaaaccctcaatgtctgcaattac...
species | Glycine max |
transcript | GLYMA20G32030.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATATNCTCGAGGTCTTACTNGGTGGTGGCCTAGAAGTTGTCCACTACGG ATTAGCATCAACACCAGCCATGTTCEST: gi|208110117|gb|GD904881.1|GD904881
genomic: AATAT-CTCGAGGTCTTGCT-GGTGGTGGCCTAGAAGTTGTCCACTACGGgtgggtgata ... tcatttctagATTAGCATCAACACCAGCCATGTTC
EST: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGG ATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGCEST: gi|10847956|gb|BF070534.1|BF070534
genomic: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGgtgggtgata ... tcatttctagATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGC
EST: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGG ATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGCEST: gi|20448456|gb|BQ252580.1|BQ252580
genomic: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGgtgggtgata ... tcatttctagATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGC
EST: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGG ATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGCEST: gi|207736276|gb|GD712547.1|GD712547
genomic: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGgtgggtgata ... tcatttctagATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGC
EST: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGG ATTAGCATCAACACCAGCCATGTTCAATAEST: gi|208290295|gb|GE082723.1|GE082723
genomic: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGgtgggtgata ... tcatttctagATTAGCATCAACACCAGCCATGTTCAATA
EST: GCAATGTCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGG ATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGC
genomic: GCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGgtgggtgata ... tcatttctagATTAGCATCAACACCAGCCATGTTCAATAGCACACTCACAAAGAATGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTACGGgtgggtgatattaatttttttcatatcaattatttgtgttttttattagctgagtactggtaaagtctatttgctttaaaccctcaatgtctgcaattac
- - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcaa