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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGGTTTTGACTGATCTAATAGACGGACTTCAGGAACCAGATTTTGCTGTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagtgtgtaaatgttctcggtttgcatgcatccatacattaatgtcatgaattcactgacatatcagagctttcag

Basic information

species Glycine max
transcript GLYMA20G32030.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22931555|gb|BU548694.1|BU548694
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|6341955|gb|AW164779.1|AW164779
EST:     CAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: CAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|58020778|gb|CX707520.1|CX707520
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|51344295|gb|CO985028.1|CO985028
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|208319741|gb|GE116814.1|GE116814
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
EST: gi|298163368|gb|HO012101.1|HO012101
EST:     GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGG                         ATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT
genomic: GTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagt ... gagctttcagATCTTTTCGGGAATATGGAGAAGCTGTGCTGAAACATTTGGAGAACTCAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAAGGTTTTGACTGATCTAATAGACGGACTTCAGGAACCAGATTTTGCTGTAGAACTGAGATTAAAGATAAACCAAAACCATCCAGATCTTAAAGGAGGgtaagccagtgtgtaaatgttctcggtttgcatgcatccatacattaatgtcatgaattcactgacatatcagagctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG