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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGCTGCATGGTTAGTGGAGAAAAAGAAAGCTGATGCTTCTCAGCATTTGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattgttccttatatcatttggttaagtttttttcttgccacctttaaaatataataaaggattgttgattgtgttaaaatgttatgatggtttt...

Basic information

species Glycine max
transcript GLYMA20G32030.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 4
TTTTGCTGCATGGTTAGTGGAGAAAAAGAAAGCTGATGCTTCTCAGCATTTGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattgttccttatatcatttggttaagtttttttcttg-ccacctttaaaatataa------taaaggattgttgattgtgttaaaatgttatgatggtttt
 |||| ||| |||||  | || || |||||||||||||  |||   |   |||||||||| ||||| ||||||||||||||||| ||| ||   || ||||| | | ||     |  ||  || || | |  |  || |  || | |  |  || || ||       ||   |||   | ||| ||   | |      ||       
CTTTGGTGCCTGGTTGTTAGAAAAGAAGAAAGCTGATGGATCTAGACGACTGAGAGTTTCCATTGGCCATGATTCCCGAATATCTGCCCAAAAGTTGCAGgtat-gtttcccaatattagtatgtgttgagatgattctagtggctaaatgaaatatttatccttcctagttgatacctaattttgcagagacacatggac------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596832|gb|DB964095.1|DB964095
EST:     TGAGAGTTTCTATTGGCCATGATTCCCGAATATCAGCCAAATTATTACAG                         AATGCAATATNCTCGAGGTCTTACTNGGTGGTGGCCTAGAAGTTGTCCACT
genomic: TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattg ... caaatttcagAATGCAATAT-CTCGAGGTCTTGCT-GGTGGTGGCCTAGAAGTTGTCCACT
EST: gi|208110117|gb|GD904881.1|GD904881
EST:     TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAG                         AATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
genomic: TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattg ... caaatttcagAATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
EST: gi|10847956|gb|BF070534.1|BF070534
EST:     TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAG                         AATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
genomic: TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattg ... caaatttcagAATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
EST: gi|20448456|gb|BQ252580.1|BQ252580
EST:     TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAG                         AATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
genomic: TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattg ... caaatttcagAATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
EST: gi|207736276|gb|GD712547.1|GD712547
EST:     TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAG                         AATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
genomic: TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattg ... caaatttcagAATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
EST: gi|208290295|gb|GE082723.1|GE082723
EST:     TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAG                         AATGCAATGTCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC
genomic: TGAGAGTTTCTATTGGTCATGATTCCCGAATATCAGCCAAATTATTACAGgtttagattg ... caaatttcagAATGCAATATCTCGAGGTCTTGCTGGTGGTGGCCTAGAAGTTGTCCACTAC