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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaaattcctactgccccccaagttttttcacacttttaatttttcagccttcaagctttgattgttttttagaactgtccattttcacttccattggaatggccaaattgttgagtccattgggtttgtttccttcacagAATCAGAGAATTCGTGGTCTGCTTGAGAAGTGTACTTTAGATCATGCGGCTAGAATGGAAAATTTGCATAATGAGTTGCGTGAAAGGGCTCTTTCTGATG

Basic information

species Glycine max
transcript GLYMA20G31490.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31490.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0072g00720.t01 (Vitis vinifera), 3'ss of exon 8
gtacaaaaattcctactgccccccaagttttttcacacttttaatttttcagccttcaagctttgattgtttttt---agaactgtccattttcacttccattggaatggccaaattgttgagtccattgggtttgtttccttcacagAATCAGAGAATTCGTGGTCTGCTTGAGAAGTGTACTTTAGATCATGCGGCTAGAATGGAAAATTTGCATAATGAGTTGCGTGAAAGGGCTCTTTCTGATG
                                                ||| |   ||||  || |    || |    | ||    || ||   |     ||| ||| ||  || ||||||||| ||||  |||  | || || ||||||||| |||||||| ||| ||||||| || || || ||||||||||   | || ||||||| ||||||| ||| | | |||||||| |||||||||||||
-----------------------------------------------ctcaacagacaaggcttaacctcttctggtgaaaatccccccttggtataatgatttgaa-ggtaaagttgttgagttcattatgttcatctctttgacagAATCATAGAATTCGAGGTTTGCTTGAAAAATGCACCTTAGATCATGAATCAAGGATGGAAACTTTGCATGATGGGATTCGTGAAAGAGCTCTTTCTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttccattggaatggccaaattgttgagtccattgggtttgtttccttcacagAATCAGAGAATTCGTGGTCTGCTTGAGAAGTGTACTTTAGATCATGCGGCTAGAATGGAAAATTTGCATAATGAGTTGCGTGAAAGGGCTCTTTCTGATG
                                       tttgtttccttcac  CT-rich tract
                   aaattgtt  TA-rich tract