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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTCAATTCTTGAAAGGAACAAATCCCCATACGGAATCTCATGTTTGCCTTTAACATTCCGTTCAGTTGTAGCCTCGGCAATGGATCAAATCAATTCgtaagtctaaatagtttcatataggatcggatgccttaaagaaaagtgggtgattagaatgaaatgaaaagctagctatttagtaaagaagtgggtaatt...

Basic information

species Glycine max
transcript GLYMA20G31490.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31490.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0072g00720.t01 (Vitis vinifera), 5'ss of exon 13
TTGTTTCAATTCTTGAAAGGAACAAATCCCCATACGGAATCTCATGTTTGCCTTTAACATTCCGTTCAGTTGTAGCCTCGGCAATGGATCAAATCAATTCgtaagtctaaatagtttcatataggatcggatgccttaaagaaaagtgggtgattagaatgaaatgaaaagctagctatttagtaaagaagtgggtaatt--
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CAGTATCTATTCTTGAAAGGAATAAATCTCCATACTCGATATCATACTTGCCTCTAGCATTCCGTTCGATTATGACATCAGCAATGGATCAAATCAATTTgtaagtctctggagctcactacc--atttaaaaaaagaaaagaaaaagacctatgatcatttgtagaaagatcaatcatggatcccaatatctattcttagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023282|gb|BM094316.1|BM094316
EST:     CCTTTAACATTCCGTTCAGTTGTAGCCTCGGCAATGGATCAAATCAATTC                         GATGCTTTGGTCCTTAAGGAATGAAGCAACAAAGTCAGAGGATATGTTTAT
genomic: CCTTTAACATTCCGTTCAGTTGTAGCCTCGGCAATGGATCAAATCAATTCgtaagtctaa ... atcttttcagGATGCTTTGGTCCTTAAGGAATGAAGCAACAAAGTCAGAGGATATGTTTAT