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TGACAATCCAGGACACAATCGTCGGCCAACTCGTGGTAGCGAAGACGCACTTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaactagttaatgtagtttgttattcattttgcatgtggtatgtctaaatgctgagggatgctgaattaattagtgattatttcggttcgttagt...
species | Glycine max |
transcript | GLYMA20G31490.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|208245912|gb|GE044784.1|GE044784
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|193562656|gb|FK519131.1|FK519131
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCAACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGEST: gi|213602665|gb|DB978108.1|DB978108
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCA-CAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAACTCATT TCACTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|207802579|gb|GD772112.1|GD772112
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGEST: gi|58014898|gb|CX701640.1|CX701640
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|254339804|gb|GR857929.1|GR857929
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|192303414|gb|FG995666.1|FG995666
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|193528704|gb|FK483534.1|FK483534
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGEST: gi|207796510|gb|GD767914.1|GD767914
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT TCTCTTGCACAGCAGTACAGCTCCG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAATCCAGGACACAATCGTCGGCCAACTCGTGGTAGCGAAGACGCACTTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaactagttaatgtagtttgttattcattttgcatgtggtatgtctaaatgctgagggatgctgaattaattagtgattatttcggttcgttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA