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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCTTTGAAAACTGATTTCAAAAGTCGTACTGAGCAGAGAAAGCAGTTGGTTAAGGACAACTTTGATTGCTTTGTCTCTTGCAAAACAACAATTGATGgtatgaactttatttttgcatggcattcaaagcccagtttaaccatacaaaagtaatcttttattcttgggtgtctagtattcctgtcacgctcaagctc...

Basic information

species Glycine max
transcript GLYMA20G31490.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31490.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G044681_T01 (Zea mays), 5'ss of exon 4
CTTGCTTTGAAAACTGATTTCAAAAGTCGTACTGAGCAGAGAAAGCAGTTGGTTAAGGACAACTTTGATTGCTTTGTCTCTTGCAAAACAACAATTGATGgtatgaactttatttttgcatggcattcaaagcccagtttaac-catacaaaagtaatcttttattcttgggt----gtctagtattcctgtcacgctcaagctc------
||  |||||||||||||| ||||| |  | ||  |||||| ||| ||||| || ||||| ||||||||||| |||||||| |||||||| ||||| ||||||||  ||   ||| ||  ||      ||     ||| | ||     |  |   | |  || |   | |||       |    | | | ||| |  | ||   |       
CTCACTTTGAAAACTGATCTCAAAGGGAGAACACAGCAGAAAAAACAGTTAGTCAAGGAGAACTTTGATTGTTTTGTCTCGTGCAAAACTACAATAGATGgtatttacgcaattattagatatg--ccatgttgcagataaatgttcatgatcctgagtttctggacatggacaatgattgcatctccttgtaatacacagttttatgcag

upper sequence: GLYMA20G31490.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G050647_T01 (Zea mays), 5'ss of exon 4
CTTGCTTTGAAAACTGATTTCAAAAGTCGTACTGAGCAGAGAAAGCAGTTGGTTAAGGACAACTTTGATTGCTTTGTCTCTTGCAAAACAACAATTGATGgtatgaactttatttttgcatggcattcaaagcccagtttaaccatacaaaagtaatcttttattcttggg---tgtctagtattcctgtcacgctcaagctc--------
||  | |||||||||||| ||||| |  | ||  |||||| ||| ||||| || ||||| ||||| ||||| |||||||| |||||||| ||||| ||||||||     |  || ||  ||  ||| || |   ||    ||   | ||    | ||| |   ||| |||    ||| | | || ||       | ||   |         
CTCACCTTGAAAACTGATCTCAAAGGGAGAACACAGCAGAAAAAACAGTTAGTCAAGGAGAACTTCGATTGTTTTGTCTCGTGCAAAACTACAATAGATGgtatttgtgtagttgttagata-catccatattgcaa---aaatgttca----tgatcctgagttcatggacaatgttttgcatcccctcgtaacacagttttttttgcag

upper sequence: GLYMA20G31490.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G76850.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTGCTTTGAAAACTGATTTCAAAAGTCGTACTGAGCAGAGAAAGCAGTTGGTTAAGGACAACTTTGATTGCTTTGTCTCTTGCAAAACAACAATTGATGgtatgaactttatttttgcatggcattcaaagcccagtttaaccatacaaaagtaatcttttattcttgggtgtctagtattcctgtcacgctcaagctc
||||  ||||||| ||| || ||  |||| | |  ||| || || || ||||| |||||||| ||||| ||||| ||||| || |||||||||||||||||||||     |||| || | |   | | ||     | ||||    |          || |||     | |    ||  | ||| |   |           
CTTGGCTTGAAAAGTGACTTAAAGGGTCGGAATCTGCAAAGGAAACAATTGGTGAAGGACAATTTTGACTGCTTCGTCTCATGTAAAACAACAATTGATGgtatg-----tattattacttccaactgaa----taatttatgtttttttcttctttcattttcatgttgaccactgattttcttaatag----------

upper sequence: GLYMA20G31490.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G21170.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTGCTTTGAAAACTGATTTCAAAAGTCGTACTGAGCAGAGAAAGCAGTTGGTTAAGGACAACTTTGATTGCTTTGTCTCTTGCAAAACAACAATTGATGgtatgaactttatttttgcatggcattcaaagcccagtttaaccatacaaaagtaatcttttattct-tgggtgtctagtattcctgtcacgctcaagctc
|||||  |||||| ||| || ||  | |||| |   || || || || ||||| || || || ||||| ||||||||||| || |||||||||||||||||||||      ||| || ||    |||      | | ||| | | |       || |||| | |  | | | |||  |  ||| ||| |   ||  |    
CTTGCCCTGAAAAGTGACTTAAAGGGCCGTAATCTACAAAGGAAACAATTGGTGAAAGATAATTTTGACTGCTTTGTCTCGTGTAAAACAACAATTGATGgtatg-----cattattacactcaatt----atctattttgaactt-------tactcttctctcttgttgatgtg-aacattactgcctttctttacag-

upper sequence: GLYMA20G31490.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0072g00720.t01 (Vitis vinifera), 5'ss of exon 4
CTTGCTTTGAAAACTGATTTCAAAAGTCGTACTGAGCAGAGAAAGCAGTTGGTTAAGGACAACTTTGATTGCTTTGTCTCTTGCAAAACAACAATTGATGgtatga-actttat--ttttgcatggcattcaaa-gcccagtttaaccatacaaaagtaatcttttattcttgggtgtctagtattcctgtcacgctcaagctc
|||||||| ||||| ||| ||||| | || ||| | || | ||| || |||||||| || || ||||||||||||||||| |||||||| || || |||||||||  || || |  | |||||| |  |||     | |   || |            |   |     | ||||||   |   |||  | | || |    ||||
CTTGCTTTAAAAACAGATCTCAAAGGACGGACTCAACAAAAAAAACAATTGGTTAAAGAAAATTTTGATTGCTTTGTCTCATGCAAAACTACCATAGATGgtatgccaccttgtcatcttgcatagatttctggcactcttattgattgctgcctgaaagcttgagccttttgggt---tgacattt-tcttacaccattgctc