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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgctggttttctatgttgtgaagtcggttctgatactagtcagtgtgttgaattctgttgctaaatttactatctaaagctatattttgggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGACACGCATTAACACAGCATGCTTTGCAGAATCTATTCCTTTGGACTCTT

Basic information

species Glycine max
transcript GLYMA20G31490.1
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31490.2 (Glycine max), 3'ss of exon 20
lower sequence: Vv18s0072g00720.t01 (Vitis vinifera), 3'ss of exon 20
---atgctggttttctat-gttgtgaagtcggttctgatactagtcagtgtgttgaattctg-ttgctaaatttactatctaaagctatattttgggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGACACGCATTAACACAGCATGCTTTGCAGAATCTATTCCTTTGGACTCTT
   |     |||    || | | | |       | |  |  | ||   ||  || | || || ||    ||||| |||| |   ||| ||  |   || |   || ||||||||||||| | ||| || ||| | |||||  |||||||||| ||||| || || ||||||||||||||||  || || ||||| || |||    
gcaaaagcagttacaaatagctcttataggacatatatttgttgtttatgctttaagttgtggttttctaatttgctattt--cgctgtacat---gtttgcaagGCTCTTGCACAGCAATTCAGTTCTGAGCTACTTCAGGCAGAGCTTGAAAGGACTCGGATCAACACAGCATGCTTTGTGGAGTCAATTCCATTAGACATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193552263|gb|FK509412.1|FK509412
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: gi|208245912|gb|GE044784.1|GE044784
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: gi|193562656|gb|FK519131.1|FK519131
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCAACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCA-CAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAG
EST: gi|213602665|gb|DB978108.1|DB978108
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAACTCATT                         TCACTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: gi|207802579|gb|GD772112.1|GD772112
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCACAGCAGTACAGCTCCG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCG
EST: gi|58014898|gb|CX701640.1|CX701640
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: gi|254339804|gb|GR857929.1|GR857929
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: gi|192303414|gb|FG995666.1|FG995666
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: gi|193528704|gb|FK483534.1|FK483534
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGG
EST: gi|207796510|gb|GD767914.1|GD767914
EST:     TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATT                         TCTCTTGCACAGCAGTACAGCTCCG
genomic: TTGCAGATGATAAGCAACAAGGAACAACTGTATCACCTGATGAGCTCATTgtaagcaact ... ggtatttcagTCTCTTGCACAGCAGTACAGCTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgaattctgttgctaaatttactatctaaagctatattttgggtatttcagTCTCTTGCACAGCAGTACAGCTCCGAGTTCCTTCAATCAGAGCTTGAGAGGACACGCATTAACACAGCATGCTTTGCAGAATCTATTCCTTTGGACTCTT
                 taaatttactatctaa  TA-rich tract