1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...ttatgtttacagtttaaacaatatcagcactatataaataattgtttcattatatttatttgaaggtggtctgctgagaggcaatgtttttttgtcatagGTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTGGAAGGCTTGATTGACACATTCATCAGCATTTTTCATGAAAATGAAGCTA
species | Glycine max |
transcript | GLYMA20G31490.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAG GTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTGEST: gi|193433941|gb|FK403257.1|FK403257
genomic: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAGgtaaatattg ... tttgtcatagGTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTG
EST: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAG GTTTTTGCTGGTGCTAAACCTCTGTTGGATAAA-CGCTTGGCATTCTTGTGEST: gi|207789886|gb|GD759567.1|GD759567
genomic: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAGgtaaatattg ... tttgtcatagGTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTG
EST: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAG GTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTGEST: gi|58014898|gb|CX701640.1|CX701640
genomic: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAGgtaaatattg ... tttgtcatagGTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTG
EST: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAG GTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTGEST: gi|192303414|gb|FG995666.1|FG995666
genomic: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAGgtaaatattg ... tttgtcatagGTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTG
EST: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAG GTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTG
genomic: GTGATGCAGCAGTAGAGTTGCTGCACACATTGGTAGCTGTGCATGCAGAGgtaaatattg ... tttgtcatagGTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTG
ttcattatatttatttgaaggtggtctgctgagaggcaatgtttttttgtcatagGTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTGGAAGGCTTGATTGACACATTCATCAGCATTTTTCATGAAAATGAAGCTA
tttttttgtc CT-rich tract
tatatttatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgtttacagtttaaacaatatcagcactatataaataattgtttcattatatttatttgaaggtggtctgctgagaggcaatgtttttttgtcatagGTTTTTGCTGGTGCTAAACCTCTGTTGGATAAAACGCTTGGCATTCTTGTGGAAGGCTTGATTGACACATTCATCAGCATTTTTCATGAAAATGAAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC