Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttttgttgattatggttttgtgcaataaatttagcaggaagtattttgtttgtaagtcaaactaacccctctacttgttttctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAA

Basic information

species Glycine max
transcript GLYMA20G30810.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 5
--------------------------gtaagtgttttgttgattatggttttgtgcaataaatttagcaggaagtattttgtttgtaagtcaaactaaccc----ctctacttgttttctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAA
                             ||   |   | ||||     | |||    |   |        |     | ||||||  ||  ||||| |  |     | | |||| | |     ||||||| ||||| ||||| || || || ||||| ||||||||||| |||||||| ||||  || ||  ||||| ||||||| ||||| ||||| |||||||| 
gtaccaattcgtctaccagatattacaccagcactccat-gattgcaaatctgtcttctgtttgatatgctattgcatctgtttgcgagcgaaacttaaacgatattgtgcttgctcttgcgctcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCTCACTACGGTGTTGTGAAGGGCGACTACCTCATGATCAAGGGTTGCTGTGTTGGCCCCAAGAAG

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G132968_T02 (Zea mays), 3'ss of exon 5
gtaagtgttttgttgattatggttttgtgcaataaatttagcaggaagtattttgtttgtaagtcaaactaacccctctacttgttttctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAA
      ||  | ||  | |  | ||  || | ||| ||   ||    || ||   |||||   ||    |     |     ||| |  |   | |||||||||||| ||||| || || || ||||| ||||| ||||||||| | || |||| ||| ||  | ||| ||||||||||||| || ||||| ||||| 
------gtactatttctga--gcttcttgtactaacttgcacaatctgt-ttacctttgttgctcttgttggttacg--gattgctgccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G135727_T01 (Zea mays), 3'ss of exon 5
gtaagtgttttgttgattatggttttgtgcaataaatttagcaggaagtattttgtttgtaagtcaaactaacccctctacttgttttctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAA
      ||  | ||  | |  | ||  || | ||| ||   ||    || ||   |||||   ||    |     |   | ||| |  |   | |||||||||||| ||||| || || || ||||| ||||| ||||||||| | || |||| ||| ||  | ||| ||||||||||||| || ||||| ||||| 
------gtactatttctga--gcttcttgtactaacttgcacaatctgt-ttacctttgttgctcttgttggttacg--aattgctgccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG

upper sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtgttttgttgattatggttttgtgcaataaatttagcagga----agtattttgtttgtaagtcaaacta--acccctctacttgttttctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAA
 |||||  |    |     |   |||||  | | ||| |  |||||    |  |||      |||| | | |  |      || ||||||  |  | |  |||||||||||||||||| || ||||| ||||||||||||||||| ||||| || |||||||||||| | ||| ||||||| ||||| ||||| || ||||| 
-taagtaat--aatagccctatgtttgtatactcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31305634|gb|CD390837.1|CD390837
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209714023|gb|BW684472.1|BW684472
EST:     TCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: TCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|9564470|gb|BE473979.1|BE473979
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|17964518|gb|BM271252.1|BM271252
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|26060083|gb|CA802997.1|CA802997
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|31466562|gb|CD408590.1|CD408590
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCCATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|298165599|gb|HO011648.1|HO011648
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACCGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCTTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|120492791|gb|EH220958.1|EH220958
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|15664096|gb|BI701467.1|BI701467
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATANGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|8401522|gb|BE057218.1|BE057218
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|33389309|gb|CA852516.1|CA852516
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|57574667|gb|CX547642.1|CX547642
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|13181606|gb|BG352946.1|BG352946
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|6725568|gb|AW309967.1|AW309967
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|192316083|gb|FK008894.1|FK008894
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|213610506|gb|DB978547.1|DB978547
EST:     GAGATGAATCTCACTCTGCTCTTACTGA-TCCAAATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTG
genomic: GAGATGAATCTCACTCTGCTCTTACTGAGT-TTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTG
EST: gi|31472490|gb|CD414518.1|CD414518
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|6848955|gb|AW351245.1|AW351245
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|214010043|gb|DB989415.1|DB989415
EST:     CTTGGCAAAGTTTGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|17401155|gb|BM177937.1|BM177937
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|6848172|gb|AW350462.1|AW350462
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCAGTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|298179198|gb|HO027669.1|HO027669
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|7692601|gb|AW760703.1|AW760703
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209699600|gb|BW655706.1|BW655706
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209719748|gb|BW672123.1|BW672123
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|16344024|gb|BI969619.1|BI969619
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|10846193|gb|BF069154.1|BF069154
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|14126730|gb|BG791168.1|BG791168
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|17022457|gb|BM093491.1|BM093491
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|208151168|gb|GD944759.1|GD944759
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTAA
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTT--
EST: gi|7588593|gb|AW704385.1|AW704385
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGG
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|31472162|gb|CD414190.1|CD414190
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|254326768|gb|GR836377.1|GR836377
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|31461651|gb|CD403679.1|CD403679
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|31465495|gb|CD407523.1|CD407523
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|254323134|gb|GR835742.1|GR835742
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|5820427|gb|AI988633.1|AI988633
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|9203554|gb|BE329778.1|BE329778
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|120492788|gb|EH220955.1|EH220955
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209708351|gb|BW683941.1|BW683941
EST:     GAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: GAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|11413700|gb|BF425711.1|BF425711
EST:     CTTGTCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGA
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttt ... tctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaagtattttgtttgtaagtcaaactaacccctctacttgttttctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAA
                              cccctctacttgtttt  CT-rich tract
      tattttgtttgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgttttgttgattatggttttgtgcaataaatttagcaggaagtattttgtttgtaagtcaaactaacccctctacttgttttctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA